Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012534 (ubiE) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012534 showshow history
Names
ubiE menH yigO menG JW5581 ECK3827 b3833
Product
bifunctional 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase/S-adenosylmethionine:2-DMK methyltransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4018855 4019610 756 252
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001467
EnteroFam0012534: Trusted threshold=715.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR004033 (IPR004033 UbiE/COQ5 methyltransferase) Apr 2008
Automated Process Approved IPR029063 (IPR029063 S-adenosyl-L-methionine-dependent methyltransferase) Jul 2018
Automated Process Approved PF01209 (PF01209 ubiE/COQ5 methyltransferase family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009060 aerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0008168 methyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004033
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name ubiE Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK3827 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW5581 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym menH Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved synonym yigO Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved synonym menG Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b3833 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product bifunctional 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase/S-adenosylmethionine:2-DMK methyltransferase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Apr 2007
Automated Process Approved alternate product name bifunctional 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase/ S-adenosylmethionine:2-DMK methyltransferase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved alternate product name 2-octaprenyl-6-methoxy-1,4-benzoquinone --> 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinone Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name S-adenosylmethionine:2-DMK methyltransferase; 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0012534: Trusted threshold=715.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001467
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR004033 UbiE/COQ5 methyltransferase Protein Sequence Similarity - InterPro Domain: IPR004033
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01209 ubiE/COQ5 methyltransferase family Protein Sequence Similarity - PFAM Model Name: PF01209
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Protein Sequence Similarity - InterPro Domain: IPR029063
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 2.1.1.- Published Annotation - Swiss-Prot Accession Number: P0A887 Feb 2006
Person Uncurated MultiFun 1.3.7 (metabolism; energy metabolism, carbon; anaerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.6 (metabolism; energy metabolism, carbon; aerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.3.11 (metabolism; building block biosynthesis; cofactor, small molecule carrier; menaquinone, ubiquinone) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948926 Published Annotation - Entrez Gene Database ID: 948926
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0A887 Published Annotation - Swiss-Prot Accession Number: P0A887 Jan 2006
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A887 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0012534 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:48994983 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11473 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Biosynthesis of cofactors, carriers: Menaquinone, ubiquinone Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note 2-octaprenyl-6-methoxy-1,4-benzoquinone --> 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinone; GO_process: GO:0009060 - aerobic respiration; GO_process: GO:0009061 - anaerobic respiration Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAT48227.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved sequence correction version m56: P101 to L Experimental - GenBank Accession Number: AG613344
Reference: Escherichia coli 		May 2004
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0009060 aerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0008168 methyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004033
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001467 ubiE CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000851 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000457 ubiE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000478 ubiE CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001286 ubiE CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000894 ubiE CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001462 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002447 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000192 ubiE CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003989 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004444 ubiE CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000439 ubiE_1 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0009083 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017729 ubiE CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0004062 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000075 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0296646 ubiE CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000281 ubiE CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000261 ubiE CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001730 ubiE CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007851 ubiE CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004090 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007212 ubiE CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003900 ubiE CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000333 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010390 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008905 ubiE CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006253 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080978 ubiE CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004251 ubiE CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004813 ubiE CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006300 ubiE CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009580 ubiE CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004411 ubiE CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008787 ubiE CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002648 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008604 ubiE CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007117 ubiE CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007308 ubiE CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008460 ubiE CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010107 ubiE CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008217 ubiE CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007919 ubiE CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005706 ubiE CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007546 ubiE CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009512 ubiE CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008808 ubiE CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006987 ubiE CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028977 ubiE CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009150 ubiE_3 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008743 ubiE CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004415 ubiE CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003556 ubiE CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003519 ubiE CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004465 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004522 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004294 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004430 ubiE CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178554 ubiE CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004203 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004212 ubiE CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134853 ubiE CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004811 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004429 ubiE CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003900 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000991 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004377 ubiE CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002225 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008852 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003301 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000128 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003431 ubiE CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000548 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000197 ubiE CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0004189 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0007948 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003629 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0288663 ubiE CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007188 ubiE CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060397 ubiE CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000123 ubiE CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000055 ubiE CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003753 ubiE CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009355 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0146844 ubiE CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0005228 ubiE CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008367 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003866 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004533 ubiE CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008600 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012436 ubiE CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010603 ubiE CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007584 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008653 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008251 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007564 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008181 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007754 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008602 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008820 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003850 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003809 ubiE CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004946 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008781 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008453 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008245 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007639 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112592 ubiE CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085049 ubiE CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004782 ubiE CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102228 ubiE CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005194 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008802 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008011 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000711 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267842 ubiE CDS
Person Approved Go view Shigella boydii 227 ADV-0004193 ubiE CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009722 ubiE CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006746 ubiE CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004417 ubiE CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075092 ubiE CDS
Person Approved Go view Shigella flexneri 301 ABT-0090127 ubiE CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003894 ubiE CDS
Person Approved Go view Shigella sonnei 046 ADD-0004365 ubiE CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000090 VC0083 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000138 ubiE CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0006951 ubiE CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003202 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000800 ubiE CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002572 ubiE CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001644 ubiE CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001965 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242148 ubiE CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007764 ubiE CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000310 ubiE CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007571 ubiE CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003596 ubiE CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127986 ubiE CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008159 ubiE CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006547 ubiE CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002199 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008542 ubiE CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007538 ubiE CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030056 ubiE CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006993 ubiE CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000238 ubiE CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004069 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008079 ubiE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004206 ubiE CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000273 ubiE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000324 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004678 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0000217 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000662 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4013855 to 4024610
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012520metECDSforward40130534015314Upstream
ABE-0285642repeat_regionforward40153224015344Upstream
ABE-0012522ysgACDScomplement40153544016169Upstream
ABE-0012528udpCDSforward40164314017192Upstream
ABE-0012531rmuCCDSforward40173334018760Upstream
ABE-0012534ubiECDSforward40188554019610Matches
ABE-0012536ubiJCDSforward40196244020229Downstream
ABE-0285643esrEncRNAforward40199784020229Downstream
ABE-0012539ubiBCDSforward40202264021866Downstream
ABE-0012541tatACDSforward40219454022214Downstream
ABE-0012545tatBCDSforward40222184022733Downstream
ABE-0012547tatCCDSforward40227364023512Downstream
ABE-0174116tatDCDSforward40235544024336Downstream
ABE-0012553rfaHCDScomplement40243334024821Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.