Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012559 (fre) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012559 showshow history
Names
fre fsrC hsm-6 flrD fadI JW3820 ECK3836 b3844
Product
flavin reductase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4026527 4027228 702 234
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001475
EnteroFam0012559: Trusted threshold=639.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR008333 (IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain) Apr 2008
Automated Process Approved IPR001433 (IPR001433 Oxidoreductase FAD/NAD(P)-binding) Apr 2008
Automated Process Approved IPR001221 (IPR001221 (DEPRECATED) Phenol hydroxylase reductase) Apr 2008
Automated Process Approved IPR017938 (IPR017938 Riboflavin synthase-like beta-barrel) Jul 2018
Automated Process Approved IPR039261 (IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain) Jul 2018
Automated Process Approved PF00970 (PF00970 Oxidoreductase FAD-binding domain) Jul 2018
Automated Process Approved PF00175 (PF00175 Oxidoreductase NAD-binding domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001433
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008333
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008333
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0009055 electron transfer activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name fre Experimental - PubMed ID: 10960098
Reference: Escherichia coli 		Aug 2002
Person Approved synonym JW3820 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym fadI Published Annotation - GenBank Accession Number: AL590842
Reference: Yersinia pestis CO92 		Sep 2007
Automated Process Approved synonym flrD Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved synonym hsm-6 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK3836 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym fsrC Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b3844 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product flavin reductase Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved alternate product name NAD(P)H-flavin reductase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved alternate product name aquacobalamin reductase Published Annotation - Swiss-Prot Accession Number: P0AEN1
Reference: Escherichia coli K-12 MG1655 		Jan 2007
Person Approved alternate product name ferrisiderophore reductase; flavin reductase (NADPH:flavin oxidoreductase) Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0012559: Trusted threshold=639.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001475
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Protein Sequence Similarity - InterPro Domain: IPR008333
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001433 Oxidoreductase FAD/NAD(P)-binding Protein Sequence Similarity - InterPro Domain: IPR001433
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00970 Oxidoreductase FAD-binding domain Protein Sequence Similarity - PFAM Model Name: PF00970
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Protein Sequence Similarity - InterPro Domain: IPR039261
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR017938 Riboflavin synthase-like beta-barrel Protein Sequence Similarity - InterPro Domain: IPR017938
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00175 Oxidoreductase NAD-binding domain Protein Sequence Similarity - PFAM Model Name: PF00175
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001221 (DEPRECATED) Phenol hydroxylase reductase Protein Sequence Similarity - InterPro Domain: IPR001221
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 1.-.-.- Published Annotation - Database Name: EC2GO: GO:0016491
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated EC number 1.5.1.41 Published Annotation - Swiss-Prot Accession Number: P0AEN1
Reference: Escherichia coli K-12 		Dec 2011
Person Approved EC number 1.16.1.3 Published Annotation - Swiss-Prot Accession Number: P0AEN1
Reference: Escherichia coli K-12 MG1655 		Jan 2007
Person Uncurated MultiFun 1.4.3 (metabolism; energy production/transport; electron carrier) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated comment This gene was thought to be involved with ubiquone synthesis and was accordingly named ubiB. This activity has now be mapped to the nearby aarF gene, which has been renamed ubiB. Experimental - PubMed ID: 10960098
Reference: Escherichia coli K-12 		Mar 2007
Automated Process Approved db xref ASAP:ABE-0012559 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AEN1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948325 Published Annotation - Entrez Gene Database ID: 948325
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0AEN1 Published Annotation - Swiss-Prot Accession Number: P0AEN1 Jan 2006
Automated Process Approved db xref EcoGene:EG10334 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:2367314 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Energy metabolism, carbon: Electron transport Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note ferrisiderophore reductase; flavin reductase (NADPH:flavin oxidoreductase); GO_function: GO:0009055 - electron carrier activity Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76847.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008333
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001433
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO molecular function GO:0009055 electron transfer activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008333
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001475 fre CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000841 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000865 fre CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000947 fre CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000804 fre CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000987 fre CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001452 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002436 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000182 fre CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003979 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004435 fre CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0000430 fre CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0009073 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017740 fre CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0004052 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000066 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0296674 fre CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000290 ubiB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000270 fre CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001739 fre CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007842 fre CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004099 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007203 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003909 fre CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000324 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010381 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008896 fre CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006262 fre pseudogene
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080987 fre CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004260 fre CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004804 fre CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006309 fre CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009571 fre CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004420 fre CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008796 fre CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002657 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008613 fre CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007126 fre CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007317 fre CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008451 fre CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010116 fre CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008208 fre CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007928 fre CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005715 fre CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007555 fre CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009521 fre CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008799 fre CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006996 fre CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028986 fre CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009141 fre CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008752 fre CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004406 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003564 fre CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003510 fre CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004456 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004531 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004285 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004439 fre CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178563 fre CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004212 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004221 fre CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134862 fre CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004820 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004438 fre CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003910 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001002 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004386 fre CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002216 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008842 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003311 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000118 fre CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003440 fre CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000539 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000206 fre CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0004180 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0007958 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003638 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288672 fre CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007198 ubiB CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060407 fre CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000114 fre CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000062 fre CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003763 fre CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009345 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0146825 fre CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008376 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003857 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004542 fre CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008609 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012463 ubiB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010577 ubiB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007575 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008662 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008260 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007573 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008190 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007763 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008611 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008811 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003859 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003818 fre CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004956 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008790 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008444 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008254 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007648 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112576 fre CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085040 fre CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004792 fre CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102253 fre CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005185 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008793 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008020 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000700 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264055 fre CDS
Person Approved Go view Shigella boydii 227 ADV-0004202 fre CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009731 fre CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006737 fre CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004408 fre CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075082 fre CDS
Person Approved Go view Shigella flexneri 301 ABT-0090136 fre CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003885 ubiB CDS
Person Approved Go view Shigella sonnei 046 ADD-0004374 fre CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000327 VC0312 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0006933 fre CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003212 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000827 fadI CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002582 fre CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001634 fre CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001955 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242169 fre CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006024 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004103 fre CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007558 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003607 fre CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127945 fre CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008676 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006560 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003269 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008555 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007551 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030070 fre CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007006 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000251 fre CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004059 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004406 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004216 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000283 fre CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000334 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004668 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0000188 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000653 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4021527 to 4032228
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012539ubiBCDSforward40202264021866Upstream
ABE-0012541tatACDSforward40219454022214Upstream
ABE-0012545tatBCDSforward40222184022733Upstream
ABE-0012547tatCCDSforward40227364023512Upstream
ABE-0174116tatDCDSforward40235544024336Upstream
ABE-0012553rfaHCDScomplement40243334024821Upstream
ABE-0012557ubiDCDSforward40249884026481Upstream
ABE-0012559freCDSforward40265274027228Matches
ABE-0285644repeat_regionforward40273224027602Downstream
ABE-0012562fadACDScomplement40276094028772Downstream
ABE-0012564fadBCDScomplement40287824030971Downstream
ABE-0012569pepQCDSforward40311614032492Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.