Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012564 (fadB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012564 showshow history
Names
fadB JW3822 ECK3838 oldB b3846
Product
fatty acid oxidation complex subunit alpha
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4028782 4030971 2190 730
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001753 (IPR001753 Enoyl-CoA hydratase/isomerase) Apr 2008
Automated Process Approved IPR006176 (IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding) Apr 2008
Automated Process Approved IPR006108 (IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal) Apr 2008
Automated Process Approved IPR006180 (IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site) Apr 2008
Automated Process Approved IPR013328 (IPR013328 6-phosphogluconate dehydrogenase, domain 2) Apr 2008
Automated Process Approved IPR012799 (IPR012799 Fatty oxidation complex, alpha subunit FadB) Apr 2008
Automated Process Approved IPR008927 (IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily) Apr 2008
Automated Process Approved IPR036291 (IPR036291 NAD(P)-binding domain superfamily) Jul 2018
Automated Process Approved IPR029045 (IPR029045 ClpP/crotonase-like domain superfamily) Jul 2018
Automated Process Approved PF02737 (PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain) Jul 2018
Automated Process Approved PF00378 (PF00378 Enoyl-CoA hydratase/isomerase) Jul 2018
Automated Process Approved PF00725 (PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006176, IPR006108, IPR008927
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0019395 fatty acid oxidation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009062 fatty acid catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012799
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006631 fatty acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006176
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001753
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016507 mitochondrial fatty acid beta-oxidation multienzyme complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012799
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0036125 fatty acid beta-oxidation multienzyme complex GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR012799
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004300 enoyl-CoA hydratase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012799
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008692 3-hydroxybutyryl-CoA epimerase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012799
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004165 dodecenoyl-CoA delta-isomerase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012799
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0050662 (OBSOLETE) coenzyme binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013328
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001753
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006176
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012799
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name fadB Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym oldB Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym JW3822 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK3838 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3846 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product fatty acid oxidation complex subunit alpha Experimental - PubMed ID: 6350283
Reference: Escherichia coli B 		Mar 2008
Automated Process Approved alternate product name fused 3-hydroxybutyryl-CoA epimerase/delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase/enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved alternate product name enoyl-CoA hydratase/delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase/3-hydroxyacyl-CoA epimerase/3-hydroxyacyl-CoA dehydrogenase Experimental - PubMed ID: 3286611
Reference: Escherichia coli K-12 		Mar 2008
Protein Family
Automated Process Approved protein family IPR001753 Enoyl-CoA hydratase/isomerase Protein Sequence Similarity - InterPro Domain: IPR001753
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR006108
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding Protein Sequence Similarity - InterPro Domain: IPR006176
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Protein Sequence Similarity - PFAM Model Name: PF02737
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00378 Enoyl-CoA hydratase/isomerase Protein Sequence Similarity - PFAM Model Name: PF00378
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Protein Sequence Similarity - PFAM Model Name: PF00725
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036291 NAD(P)-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036291
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR029045 ClpP/crotonase-like domain superfamily Protein Sequence Similarity - InterPro Domain: IPR029045
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site Protein Sequence Similarity - InterPro Domain: IPR006180
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR008927
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013328 6-phosphogluconate dehydrogenase, domain 2 Protein Sequence Similarity - InterPro Domain: IPR013328
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR012799 Fatty oxidation complex, alpha subunit FadB Protein Sequence Similarity - InterPro Domain: IPR012799
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 5.1.2.3 Published Annotation - Swiss-Prot Accession Number: P21177 Feb 2006
Person Approved EC number 5.3.3.8 Published Annotation - Swiss-Prot Accession Number: P21177 Feb 2006
Automated Process Uncurated EC number 1.-.-.- Published Annotation - Database Name: EC2GO: GO:0016491
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 4.2.1.17 Published Annotation - Swiss-Prot Accession Number: P21177 Feb 2006
Person Approved EC number 1.1.1.35 Published Annotation - Swiss-Prot Accession Number: P21177 Feb 2006
Person Uncurated MultiFun 1.1.2 (metabolism; carbon utilization; fatty acids) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P21177 Published Annotation - Swiss-Prot Accession Number: P21177 Jan 2005
Automated Process Approved db xref GI:1790281 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948336 Published Annotation - Entrez Gene Database ID: 948336
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref ASAP:ABE-0012564 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10279 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P21177 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Degradation of small molecules: Fatty acids Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note 4-enzyme protein: 3-hydroxyacyl-CoA dehydrogenase; 3-hydroxybutyryl-CoA epimerase; delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase; enoyl-CoA hydratase; GO_process: GO:0019395 - fatty acid oxidation Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76849.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 9.46
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0019395 fatty acid oxidation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006176, IPR006108, IPR008927
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0009062 fatty acid catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012799
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001753
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006631 fatty acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006176
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016507 mitochondrial fatty acid beta-oxidation multienzyme complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012799
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO cellular component GO:0036125 fatty acid beta-oxidation multienzyme complex GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR012799
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001753
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004300 enoyl-CoA hydratase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012799
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008692 3-hydroxybutyryl-CoA epimerase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012799
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004165 dodecenoyl-CoA delta-isomerase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012799
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012799
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0050662 (OBSOLETE) coenzyme binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013328
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006176
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000839 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001308 fadB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001499 fadB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001752 fadB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001458 fadB CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001450 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002434 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000180 fadB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003977 fadB CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004433 fadB CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000426 fadB CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0009068 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0017746 fadB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0004050 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000064 fadB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0296683 fadB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000292 fadB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000272 fadB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001742 fadB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007840 fadB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004101 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007201 fadB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003911 fadB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000322 fadB CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010379 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008894 fadB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006264 FadB CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080989 fadB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004262 fadB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004802 fadB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006311 fadB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009569 fadB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004422 fadB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008798 fadB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002659 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008615 fadB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007128 fadB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007319 fadB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008449 fadB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010118 fadB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008206 fadB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007930 fadB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005717 fadB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007557 fadB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009523 fadB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008797 fadB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028988 fadB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009139 fadB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008755 fadB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004404 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003566 fadB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003508 fadB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004454 fadB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004533 fadB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004283 fadB CDS
Person Uncurated Go view Escherichia coli Nissle 1917 AML-0004441 fadB pseudogene
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178565 fadB CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004214 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004223 fadB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134864 fadB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004822 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004440 fadB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003912 fadB CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001004 fadB CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004388 fadB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002214 fadB CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008834 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003313 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000116 fadB CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003442 fadB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000537 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000208 fadB CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0004178 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0007960 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003640 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288674 fadB CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007200 fadB CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060409 fadB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000118 fadB CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001270 fadB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003766 fadB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009343 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0003575 fadB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008379 fadB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003855 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004546 fadB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008612 fadB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012476 fadB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010560 fadB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007572 fadB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008665 fadB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008263 fadB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007576 fadB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008193 fadB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007766 fadB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008614 fadB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008808 fadB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003862 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003821 fadB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004959 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008793 fadB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008438 fadB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008257 fadB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007651 fadB CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112564 fadB CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0085037 fadB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004795 fadB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102264 fadB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005182 fadB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008790 fadB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008023 fadB CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000698 fadB CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0263555 fadB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009733 fadB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006735 fadB CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004406 fadB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075079 fadB CDS
Person Approved Go view Shigella flexneri 301 ABT-0090138 fadB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003883 fadB CDS
Person Approved Go view Shigella sonnei 046 ADD-0004376 fadB CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002871 VC2758 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0006928 fadB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003214 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000837 fadB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002584 fadB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001632 fadB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001953 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242172 fadB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006026 fadB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004101 fadB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007556 fadB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003609 fadB CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127934 fadB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008678 fadB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006562 fadB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003271 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008557 fadB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007553 fadB CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030072 fadB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007009 fadB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000253 fadB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004057 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004408 fadB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004218 fadB CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000285 fadB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000336 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004666 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0000174 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000651 fadB CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4023782 to 4035971
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0174116tatDCDSforward40235544024336Downstream
ABE-0012553rfaHCDScomplement40243334024821Downstream
ABE-0012557ubiDCDSforward40249884026481Downstream
ABE-0012559freCDSforward40265274027228Downstream
ABE-0285644repeat_regionforward40273224027602Downstream
ABE-0012562fadACDScomplement40276094028772Downstream
ABE-0012564fadBCDScomplement40287824030971Matches
ABE-0012569pepQCDSforward40311614032492Upstream
ABE-0012571yigZCDSforward40324924033106Upstream
ABE-0012574trkHCDSforward40331454034596Upstream
ABE-0012577hemGCDSforward40346084035153Upstream
ABE-0012579rrsArRNAforward40355314037072Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.