Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012574 (trkH) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012574 showshow history
Names
trkH sapJ JW5576 ECK3841 b3849
Product
potassium transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4033145 4034596 1452 484
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003445 (IPR003445 Cation transporter) Apr 2008
Automated Process Approved IPR004772 (IPR004772 TrkH potassium transport family) Apr 2008
Automated Process Approved PF02386 (PF02386 Cation transport protein) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006812 cation transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003445
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0071805 potassium ion transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004772
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003445
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004772
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0015379 potassium:chloride symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004772
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0008324 cation transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003445
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name trkH Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW5576 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK3841 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym sapJ Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b3849 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product potassium transporter Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name potassium transport protein, requires TrkE (Trk family) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name potassium uptake, requires TrkE Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family PF02386 Cation transport protein Protein Sequence Similarity - PFAM Model Name: PF02386
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR003445 Cation transporter Protein Sequence Similarity - InterPro Domain: IPR003445
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004772 TrkH potassium transport family Protein Sequence Similarity - InterPro Domain: IPR004772
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.96 (transport; substrate; K+) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.2.A.38 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The K+ Transporter (Trk) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0012574 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11021 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AFZ7 Published Annotation - Swiss-Prot Accession Number: P0AFZ7 Jan 2006
Automated Process Approved db xref GeneID:948333 Published Annotation - Entrez Gene Database ID: 948333
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:48994987 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AFZ7 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Transport of small molecules: Cations Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note potassium uptake, requires TrkE; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAT48231.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved sequence correction version m56: frameshift error corrected, altering C-term. beyond aa 417 Experimental - GenBank Accession Number: AG613348
Reference: Escherichia coli 		May 2004
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006812 cation transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003445
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0071805 potassium ion transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004772
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003445
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004772
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0015379 potassium:chloride symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004772
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0008324 cation transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003445
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000836 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000878 trkH CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000733 trkH CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000282 trkH CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000214 trkH CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001447 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002431 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000177 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003974 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004430 trkG CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000423 trkG_1 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0009065 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0017749 trkH CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0004047 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000061 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0296696 trkH CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000295 trkH CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000275 trkH CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001745 trkH CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007837 trkH CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004104 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007198 trkH CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003914 trkH CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000319 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010376 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008891 trkH CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006267 TrkH CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080992 trkH CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004265 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004799 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006314 trkH CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009566 trkH CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004425 trkH CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008801 trkH CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002662 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008618 trkH CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007131 trkH CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007322 trkH CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008446 trkH CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010121 trkH CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008203 trkH CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007933 trkH CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005720 trkH CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007560 trkH CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009526 trkH CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008794 trkH CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007002 trkH CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028991 trkH CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009135 trkH CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008758 trkH CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004401 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003569 trkH CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003505 trkH CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004451 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004536 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004280 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004444 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178568 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004217 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004226 trkH CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134867 trkH CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004825 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004443 trkH CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003915 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001007 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004391 trkH CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002211 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008831 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003316 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000113 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003445 trkH CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000534 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000211 trkH CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0004175 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0007963 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003643 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0288677 trkH CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007203 trkH CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060412 trkH CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003567 trkH CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000065 trkH CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003769 trkH CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009340 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001835 trkH CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008382 trkH CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003852 CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008615 trkH CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012491 trkH CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010549 trkH CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007569 trkH CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008668 trkH CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008266 trkH CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008196 trkH CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007769 trkH CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008617 trkH CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008805 trkH CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003865 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003824 trkH CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004962 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008796 trkH CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008435 trkH CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008260 trkH CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007654 trkH CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112557 trkH CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0085034 trkH CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004798 trkH CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102277 trkH CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005179 trkH CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008787 trkH CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008026 trkH CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000693 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0263558 trkH-1 CDS
Person Approved Go view Shigella boydii 227 ADV-0004207 trkH CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009736 trkH CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006732 trkH CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004403 trkH CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075076 trkH CDS
Person Approved Go view Shigella flexneri 301 ABT-0090141 trkH CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003880 trkH CDS
Person Approved Go view Shigella sonnei 046 ADD-0004379 trkH CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002869 VC2756 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000135 trkH CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0006922 trkH CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003217 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000851 trkH CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002587 trkH CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001629 trkH CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001950 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242175 trkH CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006029 trkH CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004095 trkH CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007551 trkH CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003612 trkH CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127912 trkH CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008683 trkH CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006567 trkH CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003273 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008562 trkH CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007558 trkH CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030077 trkH CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007014 trkH CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000258 trkH CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004053 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004413 trkH CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004221 trkH CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000288 trkH CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000339 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004662 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0000162 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000648 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21496mutantTn5 InsertionRequest the StrainABE-0012574trkHtrkH::Tn5KAN-I-SceI at position 628 in Minus orientation ,+ pKD460Blattner Laboratory
FB21497mutantTn5 InsertionRequest the StrainABE-0012574trkHtrkH::Tn5KAN-I-SceI at position 628 in Minus orientation ,- pKD465Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4028145 to 4039596
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012562fadACDScomplement40276094028772Upstream
ABE-0012564fadBCDScomplement40287824030971Upstream
ABE-0012569pepQCDSforward40311614032492Upstream
ABE-0012571yigZCDSforward40324924033106Upstream
ABE-0012574trkHCDSforward40331454034596Matches
ABE-0012577hemGCDSforward40346084035153Downstream
ABE-0012579rrsArRNAforward40355314037072Downstream
ABE-0012581ileTtRNAforward40371414037217Downstream
ABE-0012584alaTtRNAforward40372604037335Downstream
ABE-0012586rrlArRNAforward40375194040423Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.