Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012606 (dsbA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012606 showshow history
Names
dsbA JW3832 dsf ECK3852 ppfA iarA b3860
Product
periplasmic protein disulfide isomerase I
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4043418 4044044 627 209
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001483
EnteroFam0012606: Trusted threshold=543; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001853 (IPR001853 DSBA-like thioredoxin domain) Apr 2008
Automated Process Approved IPR006662 (IPR006662 (DEPRECATED) Thioredoxin-like subdomain) Apr 2008
Automated Process Approved IPR012335 (IPR012335 (DEPRECATED) Thioredoxin fold) Apr 2008
Automated Process Approved IPR012336 (IPR012336 Thioredoxin-like fold) Apr 2008
Automated Process Approved IPR036249 (IPR036249 Thioredoxin-like superfamily) Jul 2018
Automated Process Approved PF01323 (PF01323 DSBA-like thioredoxin domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006457 protein folding GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655 		Nov 2006
Automated Process Approved GO biological process GO:0045454 cell redox homeostasis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006662
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006950 response to stress GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655 		Nov 2006
Automated Process Approved GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001853
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0042597 periplasmic space GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655 		Nov 2006
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0015035 protein-disulfide reductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001853
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name dsbA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym iarA Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ECK3852 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW3832 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym dsf Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ppfA Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b3860 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product periplasmic protein disulfide isomerase I Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name protein disulfide isomerase I, essential for cytochrome c synthesis and formate-dependent reduction Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0012606: Trusted threshold=543; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001483
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR001853 DSBA-like thioredoxin domain Protein Sequence Similarity - InterPro Domain: IPR001853
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01323 DSBA-like thioredoxin domain Protein Sequence Similarity - PFAM Model Name: PF01323
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036249 Thioredoxin-like superfamily Protein Sequence Similarity - InterPro Domain: IPR036249
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006662 (DEPRECATED) Thioredoxin-like subdomain Protein Sequence Similarity - InterPro Domain: IPR006662
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR012336 Thioredoxin-like fold Protein Sequence Similarity - InterPro Domain: IPR012336
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR012335 (DEPRECATED) Thioredoxin fold Protein Sequence Similarity - InterPro Domain: IPR012335
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 5.5 (cell processes; adaptation to stress) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.2 (location of gene products; periplasmic space) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 2.3.4 (information transfer; protein related; chaperoning, folding) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11297 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948353 Published Annotation - Entrez Gene Database ID: 948353
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AEG4 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0012606 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1790291 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AEG4 Published Annotation - Swiss-Prot Accession Number: P0AEG4 Jan 2006
Person Approved function enzyme; Proteins - translation and modification Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Uncurated note expressed both as monocistronic transcript and as a bicistronic transcript containing yihE Experimental - PubMed ID: 12511488
Reference: Escherichia coli 		Jan 2006
Person Uncurated note expressed both as monocistronic transcript and as a bicistronic transcript containing yihE Experimental - PubMed ID: 12511488
Reference: Escherichia coli 		Dec 2005
Automated Process Approved note protein disulfide isomerase I, essential for cytochrome c synthesis and formate-dependent reduction; GO_component: GO:0042597 - periplasmic space; GO_process: GO:0006457 - protein folding; GO_process: GO:0006950 - response to stress Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76858.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Periplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0045454 cell redox homeostasis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006662
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006950 response to stress GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655 		Nov 2006
Person Uncurated GO biological process GO:0006457 protein folding GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655 		Nov 2006
Person Uncurated GO cellular component GO:0042597 periplasmic space GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655 		Nov 2006
Automated Process Approved GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001853
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0015035 protein-disulfide reductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001853
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001483 dsbA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000126 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000287 dsbA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000386 dsbA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000757 dsbA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000276 dsbA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000104 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003537 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129700 dsbA CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0105107 dsbA CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104544 dsbA CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004408 dsbA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004151 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004420 dsbA_2 CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0000413 dsbA_1 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0009385 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016295 dsbA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000005 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000231 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0296037 dsbA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000105 dsbA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000028 dsbA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001797 dsbA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009606 dsbA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004115 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007187 dsbA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003921 dsbA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000313 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010364 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0010380 dsbA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0010049 CDS
Person Uncurated Go view Escherichia coli BL21(DE3) AHL-0005466 pseudogene
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081003 dsbA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004278 dsbA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004782 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006324 dsbA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010884 dsbA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004436 dsbA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008813 dsbA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0006337 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008629 dsbA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007142 dsbA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007333 dsbA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008435 dsbA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010132 dsbA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008192 dsbA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007944 dsbA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007490 dsbA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007571 dsbA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010742 dsbA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010512 dsbA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007013 dsbA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029002 dsbA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009089 dsbA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008769 dsbA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004474 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003575 dsbA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003494 dsbA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004552 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004620 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004482 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004452 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178574 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004228 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004236 dsbA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134878 dsbA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001674 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004456 dsbA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003700 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000721 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004218 dsbA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002397 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0009108 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003100 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000107 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003231 dsbA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000755 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0004072 dsbA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000099 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011679 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000739 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0286257 dsbA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006988 dsbA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060223 dsbA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000025 dsbA CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001212 dsbA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001467 dsbA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009553 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0137638 dsbA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008393 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003841 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004568 dsbA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008627 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012514 dsbA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010415 dsbA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007557 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008680 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007894 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007590 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007278 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007780 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008628 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008569 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003876 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003835 dsbA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004977 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008809 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006769 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008272 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006863 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113169 dsbA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085348 dsbA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004812 dsbA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102300 dsbA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005166 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007910 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0009331 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000986 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0263884 dsbA CDS
Person Approved Go view Shigella boydii 227 ADV-0004218 dsbA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009748 dsbA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005861 dsbA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004392 dsbA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075064 dsbA CDS
Person Approved Go view Shigella flexneri 301 ABT-0090148 dsbA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003870 dsbA CDS
Person Approved Go view Shigella sonnei 046 ADD-0004389 dsbA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000035 VC0034 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000418 dsbA CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007769 dsbA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002891 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000056 dsbA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0004076 dsbA_3 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003381 dsbA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003250 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234276 dsbA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004124 dsbA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004205 dsbA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007832 dsbA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003272 dsbA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0115369 dsbA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007967 dsbA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006306 dsbA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002945 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009686 dsbA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008411 dsbA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033599 dsbA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005125 dsbA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000313 dsbA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004668 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008378 dsbA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0003945 dsbA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000022 dsbA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000019 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004976 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0005953 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000952 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21502mutantTn5 InsertionRequest the StrainABE-0012606dsbAdsbA::Tn5KAN-I-SceI at position 232 in Plus orientation ,+ pKD460Blattner Laboratory
FB21503mutantTn5 InsertionRequest the StrainABE-0012606dsbAdsbA::Tn5KAN-I-SceI at position 232 in Plus orientation ,- pKD465Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4038418 to 4049044
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012586rrlArRNAforward40375194040423Upstream
ABE-0012588rrfArRNAforward40405174040636Upstream
ABE-0285645repeat_regionforward40408644040899Upstream
ABE-0012591mobBCDScomplement40409064041433Upstream
ABE-0012593mobACDScomplement40414154041999Upstream
ABE-0012599yihDCDSforward40420694042338Upstream
ABE-0012604srkACDSforward40424154043401Upstream
ABE-0012606dsbACDSforward40434184044044Matches
ABE-0012609yihFCDSforward40441994045629Downstream
ABE-0012611yihGCDScomplement40456704046602Downstream
ABE-0012618polACDSforward40469664049752Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.