Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012629 (hemN) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012629 showshow history
Names
hemN yihJ JW3838 ECK3860 b3867
Product
coproporphyrinogen III dehydrogenase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4052045 4053418 1374 458
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001487
EnteroFam0012629: Trusted threshold=1274.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR007197 (IPR007197 Radical SAM) Apr 2008
Automated Process Approved IPR010723 (IPR010723 HemN, C-terminal) Apr 2008
Automated Process Approved IPR006638 (IPR006638 Elp3/MiaB/NifB) Apr 2008
Automated Process Approved IPR004558 (IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN) Apr 2008
Automated Process Approved IPR034505 (IPR034505 Anaerobic coproporphyrinogen-III oxidase) Jul 2018
Automated Process Approved PF06969 (PF06969 HemN C-terminal domain) Jul 2018
Automated Process Approved PF04055 (PF04055 Radical SAM superfamily) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004558
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006779 porphyrin-containing compound biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010723
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010723
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004109 coproporphyrinogen oxidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010723
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007197
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0051536 iron-sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007197
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name hemN Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW3838 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yihJ Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK3860 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3867 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product coproporphyrinogen III dehydrogenase Published Annotation - EcoCyc Accession Number: EG11836
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Approved alternate product name coproporphyrinogen III oxidase, SAM and NAD(P)H dependent, oxygen-independent Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name O2-independent coproporphyrinogen III oxidase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0012629: Trusted threshold=1274.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001487
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR007197 Radical SAM Protein Sequence Similarity - InterPro Domain: IPR007197
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF04055 Radical SAM superfamily Protein Sequence Similarity - PFAM Model Name: PF04055
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR010723 HemN, C-terminal Protein Sequence Similarity - InterPro Domain: IPR010723
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR034505 Anaerobic coproporphyrinogen-III oxidase Protein Sequence Similarity - InterPro Domain: IPR034505
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN Protein Sequence Similarity - InterPro Domain: IPR004558
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF06969 HemN C-terminal domain Protein Sequence Similarity - PFAM Model Name: PF06969
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006638 Elp3/MiaB/NifB Protein Sequence Similarity - InterPro Domain: IPR006638
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated EC number 1.3.98.3 Published Annotation - Swiss-Prot Accession Number: P32131
Reference: Escherichia coli K-12 MG1655 		Nov 2018
Automated Process Uncurated EC number 1.3.3.3 Published Annotation - Database Name: EC2GO: GO:0004109
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 1.5.3.12 (metabolism; building block biosynthesis; cofactor, small molecule carrier; heme, porphyrine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:87082341 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P32131 Published Annotation - Swiss-Prot Accession Number: P32131 Jan 2005
Automated Process Approved db xref EcoGene:EG11836 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948362 Published Annotation - Entrez Gene Database ID: 948362
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P32131 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0012629 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Biosynthesis of cofactors, carriers: Heme, porphyrin Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note O2-independent coproporphyrinogen III oxidase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76864.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.97
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004558
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006779 porphyrin-containing compound biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010723
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010723
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004109 coproporphyrinogen oxidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010723
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007197
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0051536 iron-sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007197
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001487 hemN CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000353 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000893 hemN CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001078 hemN CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001229 hemN CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000794 hemN CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001913 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003532 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004413 hemN CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004145 hemN CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004413 hemN_2 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000405 hemN_1 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0009381 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016303 hemN CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000009 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000225 hemN CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0296053 hemN CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000110 hemN CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000032 hemN CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001808 hemN CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007600 hemN CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004122 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007174 hemN CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003927 hemN CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000304 hemN CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010355 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008351 hemN CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006552 hemN pseudogene
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081015 hemN CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004287 hemN CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004772 hemN CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006335 hemN CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007697 hemN CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004444 hemN CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008821 hemN CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001089 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008642 hemN CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007155 hemN CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007346 hemN CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006982 hemN CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010145 hemN CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007941 hemN CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007957 hemN CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007502 hemN CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007585 hemN CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007348 hemN CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007298 hemN CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007027 hemN CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029010 hemN CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009099 hemN_2 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008779 hemN CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004466 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003581 hemN CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003486 hemN CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004559 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004613 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004475 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004463 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178582 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004237 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004246 hemN CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134885 hemN CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001684 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004465 hemN CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003704 hemN CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000716 hemN CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004223 hemN CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002392 hemN CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0009104 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003096 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000103 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003227 hemN CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000759 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0004067 hemN CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0000103 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011675 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000735 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0286261 hemN CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006984 hemN CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060228 hemN CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000017 hemN CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001214 hemN CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001472 hemN CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009549 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0137290 hemN CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0002031 hemN CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008401 hemN CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003831 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004576 hemN CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008635 hemN CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012534 hemN CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010397 hemN CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007549 hemN CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008688 hemN CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007886 hemN CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007597 hemN CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007286 hemN CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007788 hemN CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008636 hemN CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008577 hemN CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003883 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003842 hemN CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004987 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008817 hemN CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006760 hemN CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008280 hemN CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006871 hemN CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113156 hemN CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085341 hemN CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004821 hemN CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102317 hemN CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005156 hemN CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007900 hemN CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0009149 hemN CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000991 hemN CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0268390 hemN CDS
Person Approved Go view Shigella boydii 227 ADV-0004226 hemN CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009760 hemN CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0008179 hemN CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004381 hemN CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075057 hemN CDS
Person Approved Go view Shigella flexneri 301 ABT-0090155 hemN CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003862 hemN CDS
Person Approved Go view Shigella sonnei 046 ADD-0004397 hemN CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000123 VC0116 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007912 hemN CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002887 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000071 hemN CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0004080 hemN_1 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003385 hemN CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003246 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234285 hemN CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004130 hemN CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004198 hemN CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007826 hemN CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003267 hemN CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0115384 hemN CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007960 hemN CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006300 hemN CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001991 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009679 hemN CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008403 hemN CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033592 hemN CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005117 hemN CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000321 hemN CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004662 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008385 hemN CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0003951 hemN CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000028 hemN CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000024 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004972 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0005907 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000946 hemN CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21506mutantTn5 InsertionRequest the StrainABE-0012629hemNhemN::Tn5KAN-I-SceI at position 1093 in Plus orientation ,+ pKD460Blattner Laboratory
FB21507mutantTn5 InsertionRequest the StrainABE-0012629hemNhemN::Tn5KAN-I-SceI at position 1093 in Plus orientation ,- pKD465Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4047045 to 4058418
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012618polACDSforward40469664049752Upstream
ABE-0012621spfncRNAforward40498994050007Upstream
ABE-0285646repeat_regionforward40500334050111Upstream
ABE-0012623yihACDScomplement40501334050765Upstream
ABE-0047275csrCncRNAforward40510364051280Upstream
ABE-0012626yihICDSforward40513474051856Upstream
ABE-0012629hemNCDSforward40520454053418Matches
ABE-0285647repeat_regionforward40535304053613Downstream
ABE-0285229yshBCDScomplement40536474053757Downstream
ABE-0012632glnGCDScomplement40538694055278Downstream
ABE-0012634glnLCDScomplement40552904056339Downstream
ABE-0285648repeat_regionforward40564714056555Downstream
ABE-0012640glnACDScomplement40566254058034Downstream
ABE-0012648bipACDSforward40584074060230Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.