Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012640 (glnA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012640 showshow history
Names
glnA JW3841 ECK3863 b3870
Product
glutamine synthetase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4056625 4058034 1410 470
Sequence

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001489
EnteroFam0012640: Trusted threshold=1439.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR008147 (IPR008147 Glutamine synthetase, beta-Grasp domain) Apr 2008
Automated Process Approved IPR008146 (IPR008146 Glutamine synthetase, catalytic domain) Apr 2008
Automated Process Approved IPR001637 (IPR001637 Glutamine synthetase class-I, adenylation site) Apr 2008
Automated Process Approved IPR014746 (IPR014746 Glutamine synthetase/guanido kinase, catalytic domain) Apr 2008
Automated Process Approved IPR004809 (IPR004809 Glutamine synthetase type I) Apr 2008
Automated Process Approved IPR036651 (IPR036651 Glutamine synthetase, N-terminal domain superfamily) Jul 2018
Automated Process Approved PF03951 (PF03951 Glutamine synthetase, beta-Grasp domain) Jul 2018
Automated Process Approved PF00120 (PF00120 Glutamine synthetase, catalytic domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0006542 glutamine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006807 nitrogen compound metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008147
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009399 nitrogen fixation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004809
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006542 glutamine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008147
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0006807 nitrogen compound metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004809
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR014746
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004356 glutamate-ammonia ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008147
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name glnA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK3863 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW3841 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3870 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product glutamine synthetase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name glutamine synthetase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0012640: Trusted threshold=1439.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001489
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR008147 Glutamine synthetase, beta-Grasp domain Protein Sequence Similarity - InterPro Domain: IPR008147
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR008146 Glutamine synthetase, catalytic domain Protein Sequence Similarity - InterPro Domain: IPR008146
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF03951 Glutamine synthetase, beta-Grasp domain Protein Sequence Similarity - PFAM Model Name: PF03951
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00120 Glutamine synthetase, catalytic domain Protein Sequence Similarity - PFAM Model Name: PF00120
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036651 Glutamine synthetase, N-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036651
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR004809 Glutamine synthetase type I Protein Sequence Similarity - InterPro Domain: IPR004809
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR014746 Glutamine synthetase/guanido kinase, catalytic domain Protein Sequence Similarity - InterPro Domain: IPR014746
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001637 Glutamine synthetase class-I, adenylation site Protein Sequence Similarity - InterPro Domain: IPR001637
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 6.3.1.2 Published Annotation - Swiss-Prot Accession Number: P0A9C5 Feb 2006
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.8.3 (metabolism; metabolism of other compounds; nitrogen metabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.1.2 (metabolism; building block biosynthesis; amino acids; glutamine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1790301 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948370 Published Annotation - Entrez Gene Database ID: 948370
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref ASAP:ABE-0012640 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A9C5 Published Annotation - Swiss-Prot Accession Number: P0A9C5 Jan 2006
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A9C5 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10383 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Amino acid biosynthesis: Glutamine Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006542 - glutamine biosynthetic process; GO_process: GO:0006807 - nitrogen compound metabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76867.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.97
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006807 nitrogen compound metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008147
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006542 glutamine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008147
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0006807 nitrogen compound metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Approved GO biological process GO:0006542 glutamine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009399 nitrogen fixation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004809
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004809
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR014746
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004356 glutamate-ammonia ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008147
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001489 glnA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000350 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000466 glnA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000725 glnA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000959 glnA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000483 glnA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001909 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003527 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004416 glnA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004142 glnA CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004410 glnA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000401 glnA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0009376 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016310 glnA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000013 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000221 glnA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0296067 glnA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000113 glnA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000035 glnA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001811 glnA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007596 glnA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004126 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007170 glnA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003930 glnA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000301 glnA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010352 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008347 glnA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006556 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081018 glnA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004291 glnA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004768 glnA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006339 glnA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007693 glnA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004447 glnA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008827 glnA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001094 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008645 glnA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007158 glnA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007349 glnA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006979 glnA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010148 glnA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007938 glnA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007960 glnA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007505 glnA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007588 glnA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007345 glnA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007295 glnA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007030 glnA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029013 glnA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009102 glnA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008784 glnA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004462 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003584 glnA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003483 glnA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004563 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004608 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004471 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004467 glnA CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178585 glnA CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004240 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004250 glnA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134888 glnA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001689 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004468 glnA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003707 glnA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000704 glnA CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004226 glnA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002388 glnA CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0009099 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003093 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000100 glnA CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003224 glnA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000762 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0004064 glnA CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0000106 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011671 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000732 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0286265 glnA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006981 glnA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060231 glnA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000027 glnA CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000010 glnA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000137 glnA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009545 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0137306 glnA CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000361 glnA-1 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008404 glnA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003826 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004582 glnA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008638 glnA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012548 glnA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010380 glnA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007546 glnA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008691 glnA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007883 glnA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007600 glnA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007289 glnA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007791 glnA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008639 glnA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008580 glnA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003886 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003845 glnA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004991 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008820 glnA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006757 glnA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008283 glnA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006874 glnA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113143 glnA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085338 glnA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004826 glnA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102328 glnA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005153 glnA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007896 glnA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0009152 glnA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000995 glnA CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0268062 glnA CDS
Person Approved Go view Shigella boydii 227 ADV-0004229 glnA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009764 glnA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0008182 glnA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004378 glnA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075053 glnA CDS
Person Approved Go view Shigella flexneri 301 ABT-0090158 glnA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003859 glnA CDS
Person Approved Go view Shigella sonnei 046 ADD-0004400 glnA CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0004220 glnA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002845 VC2746 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000118 glnA CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007902 glnA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002884 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000084 glnA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003388 glnA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003243 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234290 glnA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004134 glnA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004193 glnA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007823 glnA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003264 glnA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0115394 glnA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007957 glnA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006297 glnA CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009676 glnA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008400 glnA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033589 glnA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005114 glnA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000325 glnA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004658 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008389 glnA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0003954 glnA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000031 glnA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000027 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004969 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0005877 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000942 glnA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21512mutantTn5 InsertionRequest the StrainABE-0012640glnAglnA::Tn5KAN-I-SceI at position 376 in Minus orientation ,+ pKD460Blattner Laboratory
FB21513mutantTn5 InsertionRequest the StrainABE-0012640glnAglnA::Tn5KAN-I-SceI at position 376 in Minus orientation ,- pKD465Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4051625 to 4063034
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012626yihICDSforward40513474051856Downstream
ABE-0012629hemNCDSforward40520454053418Downstream
ABE-0285647repeat_regionforward40535304053613Downstream
ABE-0285229yshBCDScomplement40536474053757Downstream
ABE-0012632glnGCDScomplement40538694055278Downstream
ABE-0012634glnLCDScomplement40552904056339Downstream
ABE-0285648repeat_regionforward40564714056555Downstream
ABE-0012640glnACDScomplement40566254058034Matches
ABE-0012648bipACDSforward40584074060230Upstream
ABE-0012651yihLCDSforward40604474061157Upstream
ABE-0012653yihMCDSforward40611654062145Upstream
ABE-0012656yihNCDSforward40622474063512Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.