Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012659 (ompL) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012659 showshow history
Names
ompL yshA JW3846 ECK3868 b3875
Product
putative outer membrane porin L
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4063603 4064295 693 231
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR009331 (IPR009331 Oligogalacturonate-specific porin) Apr 2008
Automated Process Approved PF06178 (PF06178 Oligogalacturonate-specific porin protein (KdgM)) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO cellular component GO:0009279 cell outer membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ompL Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW3846 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK3868 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym yshA Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Approved locus tag b3875 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product putative outer membrane porin L Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Automated Process Approved alternate product name outer membrane porin L Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated alternate product name conserved hypothetical protein Published Annotation - Database Name: GenProtEC Jan 2006
Person Uncurated alternate product name putative sulfolipid porin Published Annotation - PubMed ID: 24463506
Reference: Escherichia coli K-12 MG1655 		Feb 2021
Protein Family
Automated Process Approved protein family IPR009331 Oligogalacturonate-specific porin Protein Sequence Similarity - InterPro Domain: IPR009331
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF06178 Oligogalacturonate-specific porin protein (KdgM) Protein Sequence Similarity - PFAM Model Name: PF06178
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0012659 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1790307 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948366 Published Annotation - Entrez Gene Database ID: 948366
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P76773 Published Annotation - Swiss-Prot Accession Number: P76773 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P76773 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13374 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76872.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Outer Membrane Predicted by PSORTb - PSORTb Final_Score: 9.52
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO cellular component GO:0009279 cell outer membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0006885 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003583 ompL CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003875 ompL CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0008533 ompL CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003682 ompL CDS
Ortholog
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004408 ompL CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000219 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001813 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007591 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007165 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008342 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006562 CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004296 ompL CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004763 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007688 CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008833 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001100 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008650 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007163 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007354 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006974 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010153 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007933 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007965 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007510 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007593 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007340 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007290 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007035 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029018 ompL CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003589 ompL CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003478 ompL CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004569 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004602 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004465 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004245 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004255 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134893 ompL CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001695 CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002386 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008412 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003824 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004590 yshA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008646 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012572 yshA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010360 yshA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007543 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008694 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007880 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007609 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007297 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007799 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008642 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008588 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003896 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003854 yshA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004995 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008828 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006749 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008291 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006882 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113129 CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0085329 CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004835 yshA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102360 yshA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005150 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007888 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005851 CDS
Person Uncurated Go view Shigella flexneri 2457T ABQ-0075045 ompL pseudogene
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000411 kdgM2_1 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4058603 to 4069295
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012648bipACDSforward40584074060230Downstream
ABE-0012651yihLCDSforward40604474061157Downstream
ABE-0012653yihMCDSforward40611654062145Downstream
ABE-0012656yihNCDSforward40622474063512Downstream
ABE-0285649repeat_regionforward40635194063593Downstream
ABE-0012659ompLCDScomplement40636034064295Matches
ABE-0012661yihOCDScomplement40643634065766Upstream
ABE-0012664yihPCDScomplement40658094067194Upstream
ABE-0012666yihQCDScomplement40672404069276Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.