Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012664 (yihP) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012664 showshow history
Names
yihP JW3848 ECK3870 b3877
Product
putative 2,3-dihydroxypropane-1-sulfonate export protein
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4065809 4067194 1386 462
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001927 (IPR001927 Sodium:galactoside symporter) Apr 2008
Automated Process Approved IPR036259 (IPR036259 MFS transporter superfamily) Jul 2018
Automated Process Approved PF13347 (PF13347 MFS/sugar transport protein) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006814 sodium ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001927
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001927
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001927
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name yihP Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK3870 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW3848 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3877 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product putative 2,3-dihydroxypropane-1-sulfonate export protein Published Annotation - EcoCyc Accession Number: EG11842
Reference: Escherichia coli K-12 MG1655 		Jan 2021
Person Approved alternate product name putative permease Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Approved alternate product name predicted transporter Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name putative transport protein (GPH family) Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family PF13347 MFS/sugar transport protein Protein Sequence Similarity - PFAM Model Name: PF13347
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001927 Sodium:galactoside symporter Protein Sequence Similarity - InterPro Domain: IPR001927
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036259 MFS transporter superfamily Protein Sequence Similarity - InterPro Domain: IPR036259
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.2.A.2 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The Glycoside-Pentoside-Hexuronide (GPH):Cation Symporter Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated comment The coordinates of yihP have been changed from those reported in the GenBank entry (GBAN:U00096.2) to correspond to the start site predicted in EcoGene (EG11842) and by GeneMark.hmm using multiple models, removing 7 codons from the N-terminus. Published Annotation in EcoGene - EG Number: EG11842
Reference: Escherichia coli K-12 MG1655 		Apr 2007
Automated Process Approved db xref ASAP:ABE-0012664 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948371 Published Annotation - Entrez Gene Database ID: 948371
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:145693206 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P32137 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P32137 Published Annotation - Swiss-Prot Accession Number: P32137 Jan 2005
Automated Process Approved db xref EcoGene:EG11842 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function putative transport; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note putative permease; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76874.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006814 sodium ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001927
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001927
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001927
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0003480 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001811 yihO CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002212 yihO CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0005705 yihO CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000107 yihO CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004419 yihP CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004406 yihP_1 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000217 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007589 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007163 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008340 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006564 CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004301 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004761 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007686 CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008835 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001102 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008652 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007165 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007356 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006972 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010155 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007931 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007967 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007512 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007595 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007338 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007288 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007037 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029020 yihP CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003591 yihP CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003476 yihP CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004571 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004600 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004463 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004247 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004257 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134895 yihP CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001697 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0290283 yihP CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008414 CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007541 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008696 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007878 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008644 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008590 CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004997 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006747 CDS
Automated Process Approved Go view Salmonella Typhi CT18 ABX-0113123 yihP CDS
Automated Process Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102366 yihP CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005148 CDS
Person Uncurated Go view Shigella flexneri 301 ABT-0090167 CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003848 yihP CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21514mutantTn5 InsertionRequest the StrainABE-0012664yihPyihP::Tn5KAN-I-SceI at position 775 in Plus orientation ,+ pKD460Blattner Laboratory
FB21846mutantTn5 InsertionRequest the StrainABE-0012664yihPyihP::Tn5KAN-I-SceI at position 775 in Plus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4060809 to 4072194
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012651yihLCDSforward40604474061157Downstream
ABE-0012653yihMCDSforward40611654062145Downstream
ABE-0012656yihNCDSforward40622474063512Downstream
ABE-0285649repeat_regionforward40635194063593Downstream
ABE-0012659ompLCDScomplement40636034064295Downstream
ABE-0012661yihOCDScomplement40643634065766Downstream
ABE-0012664yihPCDScomplement40658094067194Matches
ABE-0012666yihQCDScomplement40672404069276Upstream
ABE-0012669yihRCDScomplement40694754070401Upstream
ABE-0012673yihSCDScomplement40705154071756Upstream
ABE-0012675yihTCDScomplement40717734072651Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.