Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012675 (yihT) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012675 showshow history
Names
yihT squT JW3852 ECK3874 b3881
Product
sulfofructosephosphate aldolase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4071773 4072651 879 293
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR013785 (IPR013785 Aldolase-type TIM barrel) Apr 2008
Automated Process Approved IPR002915 (IPR002915 DeoC/FbaB/LacD aldolase) Apr 2008
Automated Process Approved PF01791 (PF01791 DeoC/LacD family aldolase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016829 lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002915
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name yihT Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW3852 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated synonym squT Published Annotation - EcoCyc Accession Number: EG11846
Reference: Escherichia coli K-12 MG1655 		Feb 2021
Person Approved synonym ECK3874 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3881 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product sulfofructosephosphate aldolase Experimental - PubMed ID: 24463506
Reference: Escherichia coli K-12 MG1655 		Feb 2021
Person Approved alternate product name putative aldolase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Approved alternate product name predicted aldolase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name 6-deoxy-6-sulfofructose-1-phosphate aldolase Experimental - PubMed ID: 24463506
Reference: Escherichia coli K-12 MG1655 		Feb 2021
Protein Family
Automated Process Approved protein family PF01791 DeoC/LacD family aldolase Protein Sequence Similarity - PFAM Model Name: PF01791
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR002915 DeoC/FbaB/LacD aldolase Protein Sequence Similarity - InterPro Domain: IPR002915
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013785 Aldolase-type TIM barrel Protein Sequence Similarity - InterPro Domain: IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 4.1.-.- Published Annotation - Swiss-Prot Accession Number: P32141 Feb 2006
Person Uncurated EC number 4.1.2.57 Experimental - PubMed ID: 24463506
Reference: Escherichia coli K-12 MG1655 		Feb 2021
Automated Process Uncurated EC number 4.-.-.- Published Annotation - Database Name: EC2GO: GO:0016829
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11846 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1790314 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948373 Published Annotation - Entrez Gene Database ID: 948373
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P32141 Published Annotation - Swiss-Prot Accession Number: P32141 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P32141 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0012675 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function putative enzyme; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note putative aldolase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAD13443.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016829 lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002915
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0003200 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002918 yihT CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003220 yihT CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0008824 yihT CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002819 yihT CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004422 yihT CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004402 yihT CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000214 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001816 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007585 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004134 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007159 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003935 CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010343 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008336 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006568 pseudogene
Person Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081026 yihT CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004305 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004757 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006348 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007682 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004452 CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008839 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001107 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008657 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007170 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007361 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006967 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010160 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007926 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007972 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007517 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007600 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007333 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007283 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007042 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029026 yihT CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009110 yihT CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008792 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003595 yihT CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003472 yihT CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004575 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004596 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004459 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004251 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004261 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134900 yihT CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001702 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004473 yihT CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002381 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002781 yihT CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001216 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003596 yihT CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000560 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0290278 yihT CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008419 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003818 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004596 yihT CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008652 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012594 yihT CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007536 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008701 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007873 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007615 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007303 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007805 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008649 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008595 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003902 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003860 yihT CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005002 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008834 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006742 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008297 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006888 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113118 yihT CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0085323 yihT CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004841 yihT CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102378 yihT CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005143 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007882 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005857 CDS
Person Uncurated Go view Shigella boydii 227 ADV-0004236 yihT CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009769 CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075038 yihT CDS
Person Approved Go view Shigella flexneri 301 ABT-0090171 yihT CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003844 yihT CDS
Person Uncurated Go view Shigella sonnei 046 ADD-0004409 yihT CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21813mutantTn5 InsertionRequest the StrainABE-0012675yihTyihT::Tn5KAN-I-SceI at position 673 in Minus orientation ,+ pKD460Blattner Laboratory
FB22096mutantTn5 InsertionRequest the StrainABE-0012675yihTyihT::Tn5KAN-I-SceI at position 673 in Minus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4066773 to 4077651
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012664yihPCDScomplement40658094067194Downstream
ABE-0012666yihQCDScomplement40672404069276Downstream
ABE-0012669yihRCDScomplement40694754070401Downstream
ABE-0012673yihSCDScomplement40705154071756Downstream
ABE-0012675yihTCDScomplement40717734072651Matches
ABE-0012678yihUCDScomplement40726754073571Upstream
ABE-0012681yihVCDSforward40737394074635Upstream
ABE-0012683csqRCDSforward40746694075454Upstream
ABE-0012686yihXCDSforward40755534076152Upstream
ABE-0012688yihYCDSforward40761464077018Upstream
ABE-0012690dtdCDSforward40770154077452Upstream
ABE-0012692fabYCDSforward40774494078438Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.