Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012681 (yihV) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012681 showshow history
Names
yihV squV JW5568 ECK3876 b3883
Product
sulfofructose kinase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4073739 4074635 897 299
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR002139 (IPR002139 Ribokinase/fructokinase) Apr 2008
Automated Process Approved IPR011611 (IPR011611 Carbohydrate kinase PfkB) Apr 2008
Automated Process Approved IPR002173 (IPR002173 Carbohydrate/purine kinase, PfkB, conserved site) Apr 2008
Automated Process Approved IPR029056 (IPR029056 Ribokinase-like) Jul 2018
Automated Process Approved PF00294 (PF00294 pfkB family carbohydrate kinase) Jul 2018
Automated Process Uncurated GH28 (GH28 Glycoside Hydrolase Family 28) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006014 D-ribose metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002139
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004747 ribokinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002139
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name yihV Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW5568 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated synonym squV Published Annotation - EcoCyc Accession Number: EG11848
Reference: Escherichia coli K-12 MG1655 		Feb 2021
Person Approved synonym ECK3876 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3883 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product sulfofructose kinase Experimental - PubMed ID: 24463506
Reference: Escherichia coli K-12 MG1655 		Feb 2021
Person Uncurated alternate product name 6-deoxy-6-sulfofructose kinase Experimental - PubMed ID: 24463506
Reference: Escherichia coli K-12 MG1655 		Feb 2021
Person Approved alternate product name predicted sugar kinase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name putative sugar kinase Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name putative kinase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family IPR002139 Ribokinase/fructokinase Protein Sequence Similarity - InterPro Domain: IPR002139
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011611 Carbohydrate kinase PfkB Protein Sequence Similarity - InterPro Domain: IPR011611
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated protein family GH28 Glycoside Hydrolase Family 28 Protein Sequence Similarity - CAZy Model Name: GH28
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR029056 Ribokinase-like Protein Sequence Similarity - InterPro Domain: IPR029056
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR002173 Carbohydrate/purine kinase, PfkB, conserved site Protein Sequence Similarity - InterPro Domain: IPR002173
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00294 pfkB family carbohydrate kinase Protein Sequence Similarity - PFAM Model Name: PF00294
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated EC number 2.7.1.184 Experimental - PubMed ID: 24463506
Reference: Escherichia coli K-12 MG1655 		Feb 2021
Person Uncurated EC number 2.7.1.- Protein Sequence Similarity - InterPro Domain: IPR011611
Reference: Escherichia coli K-12 MG1655 		Dec 2008
Person Uncurated MultiFun 1.7.1 (metabolism; central intermediary metabolism; unassigned reversible reactions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P32143 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:87082343 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P32143 Published Annotation - Swiss-Prot Accession Number: P32143 Jan 2005
Automated Process Approved db xref ASAP:ABE-0012681 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948382 Published Annotation - Entrez Gene Database ID: 948382
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref EcoGene:EG11848 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function putative enzyme; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note putative kinase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAD13445.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.26
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006014 D-ribose metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002139
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004747 ribokinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002139
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0006890 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002945 yihV CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003044 yihV CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0007506 yihV CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002867 yihV CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004424 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004400 rbsK_3 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000212 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001818 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007583 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004132 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007157 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003933 CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010345 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006570 CDS
Person Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081024 yihV CDS
Person Uncurated Go view Escherichia coli CI5 (UPEC) AZX-0003157 CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004307 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006346 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007680 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004450 CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008841 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001109 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008659 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007172 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007363 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006965 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010162 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007924 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007974 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007519 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007602 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007331 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007281 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007044 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029028 yihV CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009108 yihV CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008790 CDS
Person Uncurated Go view Escherichia coli IAI39 (UPEC) AIB-0003236 yihV CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003597 yihV CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003470 yihV CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004577 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004594 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004457 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004253 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004263 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134902 yihV CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001704 CDS
Person Uncurated Go view Escherichia coli UMN026 (UPEC) AIA-0004474 yihV CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004471 yihV CDS
Person Uncurated Go view Escherichia coli YD786 (UPEC) BFM-0003706 CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002379 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002783 yihV CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001214 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003598 yihV CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0000558 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0290276 yihV CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008422 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003816 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004598 yihV CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008655 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012599 yihV CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007533 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008704 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007870 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007618 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007306 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007808 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008652 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008598 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003904 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003862 yihV CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005005 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008837 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006739 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008300 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006891 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113113 yihV CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0085321 yihV CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004844 yihV CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102385 yihV CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005140 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007879 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005860 CDS
Person Uncurated Go view Shigella boydii 227 ADV-0004234 yihV CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009767 CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075036 yihV CDS
Person Approved Go view Shigella flexneri 301 ABT-0090173 yihV CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003842 yihV CDS
Person Uncurated Go view Shigella sonnei 046 ADD-0004407 yihV CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000420 rbsK_1 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4068739 to 4079635
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012666yihQCDScomplement40672404069276Upstream
ABE-0012669yihRCDScomplement40694754070401Upstream
ABE-0012673yihSCDScomplement40705154071756Upstream
ABE-0012675yihTCDScomplement40717734072651Upstream
ABE-0012678yihUCDScomplement40726754073571Upstream
ABE-0012681yihVCDSforward40737394074635Matches
ABE-0012683csqRCDSforward40746694075454Downstream
ABE-0012686yihXCDSforward40755534076152Downstream
ABE-0012688yihYCDSforward40761464077018Downstream
ABE-0012690dtdCDSforward40770154077452Downstream
ABE-0012692fabYCDSforward40774494078438Downstream
ABE-0012696yiiECDSforward40792914079509Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.