Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012686 (yihX) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012686 showshow history
Names
yihX JW5566 ECK3878 b3885
Product
phosphatase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4075553 4076152 600 200
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001491
EnteroFam0012686: Trusted threshold=493.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR005834 (IPR005834 (DEPRECATED) Haloacid dehalogenase-like hydrolase) Apr 2008
Automated Process Approved IPR005833 (IPR005833 (DEPRECATED) Haloacid dehalogenase/epoxide hydrolase) Apr 2008
Automated Process Approved IPR006402 (IPR006402 (DEPRECATED) HAD-superfamily hydrolase, subfamily IA, variant 3) Apr 2008
Automated Process Approved IPR006439 (IPR006439 HAD hydrolase, subfamily IA) Jul 2018
Automated Process Approved IPR036412 (IPR036412 HAD-like superfamily) Jul 2018
Automated Process Approved PF13419 (PF13419 Haloacid dehalogenase-like hydrolase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005834
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005833
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005834
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name yihX Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK3878 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW5566 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3885 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Automated Process Approved product phosphatase Experimental - PubMed ID: 15808744
Reference: Escherichia coli K-12 		Sep 2007
Automated Process Approved alternate product name alpha-D-Glucose-1-P phosphatase, anomer-specific Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved alternate product name predicted hydrolase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name putative phosphatase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0012686: Trusted threshold=493.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001491
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR005834 (DEPRECATED) Haloacid dehalogenase-like hydrolase Protein Sequence Similarity - InterPro Domain: IPR005834
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005833 (DEPRECATED) Haloacid dehalogenase/epoxide hydrolase Protein Sequence Similarity - InterPro Domain: IPR005833
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036412 HAD-like superfamily Protein Sequence Similarity - InterPro Domain: IPR036412
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF13419 Haloacid dehalogenase-like hydrolase Protein Sequence Similarity - PFAM Model Name: PF13419
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006402 (DEPRECATED) HAD-superfamily hydrolase, subfamily IA, variant 3 Protein Sequence Similarity - InterPro Domain: IPR006402
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006439 HAD hydrolase, subfamily IA Protein Sequence Similarity - InterPro Domain: IPR006439
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Uncurated EC number 3.-.-.- Published Annotation - Database Name: EC2GO: GO:0016787
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 3.1.3.- Published Annotation - Swiss-Prot Accession Number: P0A8Y3 Feb 2006
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A8Y3 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0012686 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948380 Published Annotation - Entrez Gene Database ID: 948380
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0A8Y3 Published Annotation - Swiss-Prot Accession Number: P0A8Y3 Jan 2006
Automated Process Approved db xref GI:87082345 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11850 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved function enzyme; Not classified Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note putative phosphatase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAD13447.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model the E-matrix Experimental - PubMed ID: 19282977
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005834
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005833
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005834
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001491 yihX CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000348 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001118 yihX CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001153 yihX CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001811 yihX CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001430 yihX CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001907 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003525 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004426 yihX CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004140 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004397 yihX CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000391 yihX CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0009374 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016317 yihX CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000016 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000210 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0296079 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000115 yihX CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000037 yihX CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001820 yihX CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007581 yihX CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004139 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007155 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003940 CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000290 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010338 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008331 yihX CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006572 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081031 yihX CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004310 yihX CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004753 yihX CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006353 yihX CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007678 yihX CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004457 yihX CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008843 yihX CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001111 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008661 yihX CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007174 yihX CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007365 yihX CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006963 yihX CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010164 yihX CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007922 yihX CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007976 yihX CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007521 yihX CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007604 yihX CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007329 yihX CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007279 yihX CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007046 yihX CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029030 yihX CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009115 yihX CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008797 yihX CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004573 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003599 yihX CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003468 yihX CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004579 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004592 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004455 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004480 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178596 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004255 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004265 yihX CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134904 yihX CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001706 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004478 yihX CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003709 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000700 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004228 yihX CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002377 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0009097 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003091 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000098 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003222 yihX CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000765 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0004061 yihX CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000108 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011669 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000730 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0286268 yihX CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006979 yihX CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060233 yihX CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000039 CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003412 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000139 yihX CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009543 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0137320 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008424 yihX CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003814 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004600 yihX CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008657 yihX CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012606 yihX CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010334 yihX CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007531 yihX CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008706 yihX CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007868 yihX CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007620 yihX CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007308 yihX CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007810 yihX CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008654 yihX CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008600 yihX CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003906 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003864 yihX CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005007 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008839 yihX CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006737 yihX CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008302 yihX CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006893 yihX CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113108 yihX CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085319 yihX CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004846 yihX CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102391 yihX CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005138 yihX CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007877 yihX CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005862 yihX CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000998 CDS
Person Approved Go view Shigella boydii 227 ADV-0004250 yihX CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009780 yihX CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005852 yihX CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004358 yihX CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075034 yihX CDS
Person Approved Go view Shigella flexneri 301 ABT-0090175 yihX CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003840 yihX CDS
Person Approved Go view Shigella sonnei 046 ADD-0004414 yihX CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002882 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000097 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0004152 yihX CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003390 yihX CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003241 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234293 yihX CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004137 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004191 yihX CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007820 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003261 yihX CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0115406 yihX CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007954 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006294 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003584 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005517 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008397 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033587 yihX CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005112 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000327 yihX CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004656 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008392 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0003956 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000033 yihX CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000029 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004967 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0005836 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000933 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4070553 to 4081152
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012673yihSCDScomplement40705154071756Upstream
ABE-0012675yihTCDScomplement40717734072651Upstream
ABE-0012678yihUCDScomplement40726754073571Upstream
ABE-0012681yihVCDSforward40737394074635Upstream
ABE-0012683csqRCDSforward40746694075454Upstream
ABE-0012686yihXCDSforward40755534076152Matches
ABE-0012688yihYCDSforward40761464077018Overlaps Downstream
ABE-0012690dtdCDSforward40770154077452Downstream
ABE-0012692fabYCDSforward40774494078438Downstream
ABE-0012696yiiECDSforward40792914079509Downstream
ABE-0012700yiiFCDSforward40797514079969Downstream
ABE-0285650repeat_regionforward40800204080117Downstream
ABE-0012703fdhECDScomplement40802994081228Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.