Escherichia coli K-12 MG1655
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012705 (fdoI) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012705 showshow history
Names
fdoI JW3863 ECK3885 b3892
Product
formate dehydrogenase O subunit gamma
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4081225 4081860 636 212
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR011577 (IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase) Apr 2008
Automated Process Approved IPR006471 (IPR006471 Formate dehydrogenase, gamma subunit) Apr 2008
Automated Process Approved IPR016174 (IPR016174 Di-haem cytochrome, transmembrane) Jul 2018
Automated Process Approved PF01292 (PF01292 Prokaryotic cytochrome b561) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0022904 respiratory electron transport chain GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR016174
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO biological process GO:0045333 cellular respiration GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006471
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Uncurated GO biological process GO:0017004 cytochrome complex assembly Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011577
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO cellular component GO:0009326 formate dehydrogenase complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006471
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR016174
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011577
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011577
Reference: Escherichia coli K-12 MG1655
Jul 2018
Person Uncurated GO molecular function GO:0009053 (DEPRECATED) electron donor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0008863 formate dehydrogenase (NAD+) activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006471
Reference: Escherichia coli K-12 MG1655
Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name fdoI Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Person Approved synonym ECK3885 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW3863 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3892 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product formate dehydrogenase O subunit gamma Published Annotation - EcoCyc Accession Number: EG11856
Reference: Escherichia coli K-12 MG1655
Oct 2021
Person Approved alternate product name formate dehydrogenase, cytochrome B556 (FDO) subunit Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Jan 2006
Person Uncurated alternate product name formate dehydrogenase-O, cytochrome B556 (FDO) subunit Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name formate dehydrogenase-O, cytochrome b556 subunit Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Automated Process Approved protein family IPR006471 Formate dehydrogenase, gamma subunit Protein Sequence Similarity - InterPro Domain: IPR006471
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family PF01292 Prokaryotic cytochrome b561 Protein Sequence Similarity - PFAM Model Name: PF01292
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase Protein Sequence Similarity - InterPro Domain: IPR011577
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR016174 Di-haem cytochrome, transmembrane Protein Sequence Similarity - InterPro Domain: IPR016174
Reference: Escherichia coli K-12 MG1655
Jul 2018
Other
Person Uncurated EC number 1.17.1.9 Published Annotation - Database Name: EC2GO: GO:0008863
Reference: Escherichia coli K-12 MG1655
Dec 2019
Person Uncurated MultiFun 1.4.1 (metabolism; energy production/transport; electron donor) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.7 (metabolism; energy metabolism, carbon; anaerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.6.15.1 (metabolism; macromolecules (cellular constituent) biosynthesis; large molecule carriers; cytochromes) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref EcoGene:EG11856 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AEL0 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref ASAP:ABE-0012705 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved db xref UniProtKB:P0AEL0 Published Annotation - Swiss-Prot Accession Number: P0AEL0 Jan 2006
Automated Process Approved db xref GeneID:948383 Published Annotation - Entrez Gene Database ID: 948383
Reference: Escherichia coli K-12 MG1655
Jun 2009
Automated Process Approved db xref GI:1790325 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved function enzyme; Energy metabolism, carbon: Anaerobic respiration Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Automated Process Approved note formate dehydrogenase, cytochrome B556 (FDO) subunit; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0009061 - anaerobic respiration; GO_process: GO:0017004 - cytochrome complex assembly Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved protein id AAD13454.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655
Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655
Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655
Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0022904 respiratory electron transport chain GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR016174
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO biological process GO:0045333 cellular respiration GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006471
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Uncurated GO biological process GO:0017004 cytochrome complex assembly Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011577
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011577
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO cellular component GO:0009326 formate dehydrogenase complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006471
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR016174
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Uncurated GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011577
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO molecular function GO:0008863 formate dehydrogenase (NAD+) activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006471
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Uncurated GO molecular function GO:0009053 (DEPRECATED) electron donor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002832 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001963 fdoI CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002057 fdoI CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001539 fdoI CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002052 fdoI CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001749 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001281 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004090 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004341 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004386 fdoI CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000383 fdoI CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006086 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017376 fdoI CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002790 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000202 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001831 fdoI CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007573 fdoI CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004149 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007147 fdoI CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003949 fdoI CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000282 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010331 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006940 fdoI CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006583 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081041 fdoI CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004318 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004738 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006364 fdoI CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007665 fdoI CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004466 fdoI CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008856 fdoI CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001124 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008671 fdoI CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007184 fdoI CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007375 fdoI CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006953 fdoI CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010174 fdoI CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007912 fdoI CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007987 fdoI CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007531 fdoI CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007614 fdoI CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007319 fdoI CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007269 fdoI CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007057 fdoI CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029041 fdoI CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009124 fdoI CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008806 fdoI CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004564 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003606 fdoI CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003461 fdoI CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004590 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004585 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004448 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004491 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178607 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004265 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004273 fdoI CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134914 fdoI CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001719 CDS
Person Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004488 fdoI CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000514 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004236 fdoI CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002360 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007361 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003203 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000222 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0007841 CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007083 fdoI CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0147936 fdoI CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008435 fdoI CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003806 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004609 fdoI CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008668 fdoI CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012626 fdoI CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010313 fdoI CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007520 fdoI CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008717 fdoI CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007857 fdoI CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007631 fdoI CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007319 fdoI CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007821 fdoI CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008665 fdoI CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008611 fdoI CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003916 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003874 fdoI CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005018 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008850 fdoI CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006726 fdoI CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008313 fdoI CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006904 fdoI CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113093 fdoI CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085309 fdoI CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004856 fdoI CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102414 fdoI CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005127 fdoI CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007866 fdoI CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005873 fdoI CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000890 CDS
Person Approved Go view Shigella boydii 227 ADV-0004258 fdoI CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009788 fdoI CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005841 fdoI CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004350 fdoI CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075021 fdoI CDS
Person Approved Go view Shigella flexneri 301 ABT-0090186 fdoI CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003828 fdoI CDS
Person Approved Go view Shigella sonnei 046 ADD-0004422 fdoI CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000176 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011919 fdoI CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002372 fdoI CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002113 fdoI CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003007 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243819 fdoI CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007891 fdoI CDS
Person Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003627 fdoI CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007240 fdoI CDS
Person Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003350 fdoI CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0129004 fdoI CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005804 fdoI CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006407 fdoI CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006170 fdoI CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006686 fdoI CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033876 fdoI CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006698 fdoI CDS
Person Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004450 fdoI CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000046 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004753 fdoI CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0008156 fdoI CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0004049 fdoI CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004940 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000049 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0005811 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000926 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)

Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21515mutantTn5 InsertionRequest the StrainABE-0012705fdoIfdoI::Tn5KAN-I-SceI at position 52 in Minus orientation ,+ pKD460Blattner Laboratory
FB21516mutantTn5 InsertionRequest the StrainABE-0012705fdoIfdoI::Tn5KAN-I-SceI at position 52 in Minus orientation ,- pKD465Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4076225 to 4086860
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012688yihYCDSforward40761464077018Downstream
ABE-0012690dtdCDSforward40770154077452Downstream
ABE-0012692fabYCDSforward40774494078438Downstream
ABE-0012696yiiECDSforward40792914079509Downstream
ABE-0012700yiiFCDSforward40797514079969Downstream
ABE-0285650repeat_regionforward40800204080117Downstream
ABE-0012703fdhECDScomplement40802994081228Overlaps Downstream
ABE-0012705fdoICDScomplement40812254081860Matches
ABE-0012708fdoHCDScomplement40818574082759Overlaps Upstream
ABE-0012710fdoGCDScomplement40827724085822Upstream
ABE-0012714fdhDCDSforward40860164086849Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.