Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012708 (fdoH) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012708 showshow history
Names
fdoH JW3864 ECK3886 b3893
Product
formate dehydrogenase O subunit beta
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4081857 4082759 903 301
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001450 (IPR001450 (DEPRECATED) 4Fe-4S binding domain) Apr 2008
Automated Process Approved IPR015246 (IPR015246 Formate dehydrogenase, transmembrane) Apr 2008
Automated Process Approved IPR006470 (IPR006470 Formate dehydrogenase iron-sulphur subunit, Proteobacteria) Apr 2008
Automated Process Approved IPR017896 (IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain) Jul 2018
Automated Process Approved PF13247 (PF13247 4Fe-4S dicluster domain) Jul 2018
Automated Process Approved PF09163 (PF09163 Formate dehydrogenase N, transmembrane) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0015944 formate oxidation GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006470
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0045333 cellular respiration GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006470
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001450
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006470
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0051539 4 iron, 4 sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006470
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0008863 formate dehydrogenase (NAD+) activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006470
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001450
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0009053 (DEPRECATED) electron donor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0051536 iron-sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001450
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name fdoH Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW3864 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK3886 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3893 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product formate dehydrogenase O subunit beta Published Annotation - EcoCyc Accession Number: EG11857
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Approved alternate product name formate dehydrogenase-O, iron-sulfur subunit Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name formate dehydrogenase-O, Fe-S subunit Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Protein Sequence Similarity - InterPro Domain: IPR017896
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF13247 4Fe-4S dicluster domain Protein Sequence Similarity - PFAM Model Name: PF13247
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF09163 Formate dehydrogenase N, transmembrane Protein Sequence Similarity - PFAM Model Name: PF09163
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR015246 Formate dehydrogenase, transmembrane Protein Sequence Similarity - InterPro Domain: IPR015246
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006470 Formate dehydrogenase iron-sulphur subunit, Proteobacteria Protein Sequence Similarity - InterPro Domain: IPR006470
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001450 (DEPRECATED) 4Fe-4S binding domain Protein Sequence Similarity - InterPro Domain: IPR001450
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated EC number 1.17.1.9 Published Annotation - Database Name: EC2GO: GO:0008863
Reference: Escherichia coli K-12 MG1655 		Dec 2019
Person Uncurated MultiFun 1.3.7 (metabolism; energy metabolism, carbon; anaerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.4.1 (metabolism; energy production/transport; electron donor) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0012708 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11857 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AAJ5 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AAJ5 Published Annotation - Swiss-Prot Accession Number: P0AAJ5 Jan 2006
Automated Process Approved db xref GeneID:948395 Published Annotation - Entrez Gene Database ID: 948395
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1790326 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Energy metabolism, carbon: Anaerobic respiration Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note formate dehydrogenase-O, iron-sulfur subunit; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0009061 - anaerobic respiration Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAD13455.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 9.82
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0015944 formate oxidation GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006470
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001450
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0045333 cellular respiration GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006470
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006470
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO molecular function GO:0009053 (DEPRECATED) electron donor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0051539 4 iron, 4 sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006470
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0051536 iron-sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001450
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001450
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008863 formate dehydrogenase (NAD+) activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006470
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000041 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002087 fdoH CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002073 fdoH CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001357 fdoH CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002151 fdoH CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001748 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001282 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004091 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004342 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004385 fdoH CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000382 fdoH CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006085 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017375 fdoH CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002791 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000201 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001832 fdoH CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007572 fdoH CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004150 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007146 fdxH CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003950 fdoH CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000281 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010330 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006939 fdoH CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006584 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081042 fdoH CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004319 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004737 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006365 fdoH CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007664 fdoH CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004467 fdoH CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008857 fdoH CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001125 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008672 fdoH CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007185 fdoH CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007376 fdoH CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006952 fdoH CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010175 fdoH CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007911 fdoH CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007988 fdoH CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007532 fdoH CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007615 fdoH CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007318 fdoH CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007268 fdoH CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007058 fdoH CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029042 fdoH CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009125 fdoH CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008807 fdoH CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004563 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003607 fdoH CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003460 fdoH CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004591 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004584 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004447 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004492 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178608 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004266 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004274 fdoH CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134915 fdoH CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001720 CDS
Person Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004489 fdoH CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000513 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004237 fdoH CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002359 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007363 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003204 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000221 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0007842 CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007084 fdoH CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0147934 fdoH CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008436 fdoH CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003805 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004610 fdoH CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008669 fdoH CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012629 fdoH CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010309 fdoH CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007519 fdoH CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008718 fdoH CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007856 fdoH CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007632 fdoH CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007320 fdoH CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007822 fdoH CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008666 fdoH CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008612 fdoH CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003917 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003875 fdoH CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005019 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008851 fdoH CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006725 fdoH CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008314 fdoH CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006905 fdoH CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113090 fdoH CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085308 fdoH CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004857 fdoH CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102417 fdoH CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005126 fdoH CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007865 fdoH CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005874 fdoH CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000891 CDS
Person Approved Go view Shigella boydii 227 ADV-0004259 fdoH CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009789 fdoH CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005840 fdoH CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004349 fdoH CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075020 fdoH CDS
Person Approved Go view Shigella flexneri 301 ABT-0090187 fdoH CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003827 fdoH CDS
Person Approved Go view Shigella sonnei 046 ADD-0004423 fdoH CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000177 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011922 fdoH CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002373 fdoH CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002112 fdoH CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003008 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243824 fdoH CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007892 CDS
Person Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003626 fdoH CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007239 CDS
Person Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003349 fdoH CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0129009 fdoH CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005803 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006406 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006171 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006685 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033877 fdoH CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006697 CDS
Person Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004451 fdoH CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000045 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004754 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0008157 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0004048 fdoH CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004939 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000048 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0005808 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000925 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21517mutantTn5 InsertionRequest the StrainABE-0012708fdoHfdoH::Tn5KAN-I-SceI at position 614 in Minus orientation ,- pKD465Blattner Laboratory
FB21518mutantTn5 InsertionRequest the StrainABE-0012708fdoHfdoH::Tn5KAN-I-SceI at position 614 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4076857 to 4087759
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012688yihYCDSforward40761464077018Downstream
ABE-0012690dtdCDSforward40770154077452Downstream
ABE-0012692fabYCDSforward40774494078438Downstream
ABE-0012696yiiECDSforward40792914079509Downstream
ABE-0012700yiiFCDSforward40797514079969Downstream
ABE-0285650repeat_regionforward40800204080117Downstream
ABE-0012703fdhECDScomplement40802994081228Downstream
ABE-0012705fdoICDScomplement40812254081860Overlaps Downstream
ABE-0012708fdoHCDScomplement40818574082759Matches
ABE-0012710fdoGCDScomplement40827724085822Upstream
ABE-0012714fdhDCDSforward40860164086849Upstream
ABE-0012718yiiGCDSforward40870024088057Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.