Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012749 (rhaT) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012749 showshow history
Names
rhaT JW3878 ECK3900 b3907
Product
L-rhamnose:proton symporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4099491 4100525 1035 345
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR010476 (IPR010476 (DEPRECATED) RhaT l-rhamnose-proton symport 2) Apr 2008
Automated Process Approved IPR004673 (IPR004673 L-rhamnose-proton symport, RhaT) Apr 2008
Automated Process Approved PF06379 (PF06379 L-rhamnose-proton symport protein (RhaT)) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008645 hexose transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004673
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0015762 rhamnose transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010476
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010476
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0009276 Gram-negative-bacterium-type cell wall GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010476
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0015153 rhamnose transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010476
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name rhaT Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK3900 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW3878 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3907 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product L-rhamnose:proton symporter Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name L-rhamnose:H+ symporter (DMT superfamily) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name rhamnose transport Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family PF06379 L-rhamnose-proton symport protein (RhaT) Protein Sequence Similarity - PFAM Model Name: PF06379
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR010476 (DEPRECATED) RhaT l-rhamnose-proton symport 2 Protein Sequence Similarity - InterPro Domain: IPR010476
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004673 L-rhamnose-proton symport, RhaT Protein Sequence Similarity - InterPro Domain: IPR004673
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.109 (transport; substrate; L-rhamnose/H+) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.2.A.7 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The Drug/Metabolite Transporter (DMT) Superfamily) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0012749 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11313 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P27125 Published Annotation - Swiss-Prot Accession Number: P27125 Jan 2005
Automated Process Approved db xref GeneID:948398 Published Annotation - Entrez Gene Database ID: 948398
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1790341 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P27125 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Transport of small molecules: Carbohydrates, organic acids, alcohols Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note rhamnose transport; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76889.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008645 hexose transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004673
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0015762 rhamnose transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010476
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0009276 Gram-negative-bacterium-type cell wall GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010476
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010476
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0015153 rhamnose transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010476
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002880 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002464 rhaT CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002506 rhaT CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0005783 rhaT CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002574 rhaT CDS
Ortholog
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0004270 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004125 rhaT CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004353 rhaT CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000368 rhaT CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000178 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007558 rhaT CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004162 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003962 rhaT CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000266 rhaT pseudogene
Person Approved Go view Escherichia coli ATCC 8739 AEM-0010314 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006922 rhaT CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006601 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081055 rhaT CDS
Person Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004336 rhaT pseudogene
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004716 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006381 rhaT CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007647 rhaT CDS
Person Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004483 rhaT CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008874 rhaT CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001143 CDS
Person Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010931 rhaT pseudogene
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029058 rhaT pseudogene
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007770 rhaT CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008822 rhaT CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004549 CDS
Person Approved Go view Escherichia coli K-12 DH10B AEC-0003619 rhaT CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003446 rhaT CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004606 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004568 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004431 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004505 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178623 CDS
Person Approved Go view Escherichia coli SE11 AFS-0004283 CDS
Person Approved Go view Escherichia coli SMS-3-5 AFT-0004294 rhaT CDS
Person Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0285301 rhaT pseudogene
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001738 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004499 rhaT CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001924 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004264 rhaT CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001326 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003718 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001772 rhaT CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002511 rhaT CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001634 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009745 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001836 CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005161 rhaT CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060665 rhaT CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003925 rhaT CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000145 rhaT CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002875 rhaT CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004962 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008457 rhaT CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003770 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004628 rhaT CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008687 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012679 rhaT CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010267 rhaT CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007501 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008735 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007839 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007648 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007342 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007844 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008683 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008630 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003932 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003890 rhaT CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005038 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008869 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006707 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008328 rhaT CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006920 rhaT CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113060 rhaT CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0085293 rhaT CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004877 rhaT CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102469 rhaT CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005110 rhaT CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007848 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005892 CDS
Person Approved Go view Shigella boydii 227 ADV-0004279 rhaT CDS
Person Approved Go view Shigella boydii BS512 ADJ-0009803 rhaT CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005822 rhaT CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004337 rhaT CDS
Person Uncurated Go view Shigella flexneri 2457T ABQ-0075001 rhaT pseudogene
Person Approved Go view Shigella flexneri 301 ABT-0090201 rhaT pseudogene
Person Uncurated Go view Shigella flexneri 8401 BAG-0003812 rhaT pseudogene
Person Approved Go view Shigella sonnei 046 ADD-0004439 rhaT CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002473 rhaT CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002955 rhaT CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235335 rhaT2 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004842 rhaT CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004711 rhaT CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007953 rhaT CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002974 rhaT CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0116435 rhaT CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006751 rhaT CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006950 rhaT CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005627 rhaT CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007455 rhaT CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030218 rhaT CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004795 rhaT CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004012 rhaT CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004372 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008843 rhaT CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007779 rhaT CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000419 rhaT CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000485 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004557 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0005751 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000910 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4094491 to 4105525
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0285652repeat_regionforward40943164094717Downstream
ABE-0012736rhaACDScomplement40947234095982Downstream
ABE-0012738rhaBCDScomplement40959794097448Downstream
ABE-0012745rhaSCDSforward40977364098572Downstream
ABE-0012747rhaRCDSforward40986464099494Overlaps Downstream
ABE-0012749rhaTCDScomplement40994914100525Matches
ABE-0012761sodACDSforward41008104101430Upstream
ABE-0012764kdgTCDSforward41016904102673Upstream
ABE-0285653repeat_regionforward41026964102721Upstream
ABE-0012769yiiMCDSforward41028224103496Upstream
ABE-0285654repeat_regionforward41035074103590Upstream
ABE-0012772cpxACDScomplement41036024104975Upstream
ABE-0012774cpxRCDScomplement41049724105670Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.