Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012764 (kdgT) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012764 showshow history
Names
kdgT JW5560 ECK3902 b3909
Product
2-keto-3-deoxy-D-gluconate transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4101690 4102673 984 328
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004684 (IPR004684 2-keto-3-deoxygluconate permease) Apr 2008
Automated Process Approved IPR018395 (IPR018395 2-keto-3-deoxygluconate permease, subgroup) Jul 2018
Automated Process Approved PF03812 (PF03812 2-keto-3-deoxygluconate permease) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0046411 2-keto-3-deoxygluconate transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004684, IPR018395
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0008643 carbohydrate transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004684
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004684
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0015649 2-keto-3-deoxygluconate:proton symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004684
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name kdgT Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK3902 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW5560 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3909 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product 2-keto-3-deoxy-D-gluconate transporter Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name 2-keto-3-deoxy-D-gluconate transport protein (KDGT family) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name 2-keto-3-deoxy-D-gluconate transport system Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family PF03812 2-keto-3-deoxygluconate permease Protein Sequence Similarity - PFAM Model Name: PF03812
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR018395 2-keto-3-deoxygluconate permease, subgroup Protein Sequence Similarity - InterPro Domain: IPR018395
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR004684 2-keto-3-deoxygluconate permease Protein Sequence Similarity - InterPro Domain: IPR004684
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.2 (transport; substrate; 2-keto-3-deoxy-D-gluconate) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.2.A.10 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The 2-Keto-3-Deoxygluconate Transporter (KDGT) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11869 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A712 Published Annotation - Swiss-Prot Accession Number: P0A712 Jan 2006
Automated Process Approved db xref GeneID:948407 Published Annotation - Entrez Gene Database ID: 948407
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:87082349 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A712 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0012764 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Transport of small molecules: Carbohydrates, organic acids, alcohols Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note 2-keto-3-deoxy-D-gluconate transport system; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76891.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0046411 2-keto-3-deoxygluconate transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004684, IPR018395
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008643 carbohydrate transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004684
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004684
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0015649 2-keto-3-deoxygluconate:proton symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004684
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001990 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002511 kdgT CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002350 kdgT CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0005162 kdgT CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002289 kdgT CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003472 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004351 kdgT_3 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000366 kdgT_2 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006469 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0019248 kdgT CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002391 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000629 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007555 kdgT CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004164 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007122 kdgT CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003971 kdgT CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000263 kdgT CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010312 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006918 kdgT CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006604 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081059 kdgT CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004338 kdgT CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004713 kdgT CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006384 kdgT CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007644 kdgT CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004485 kdgT CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008878 kdgT CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001148 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008694 kdgT CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007207 kdgT CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007398 kdgT CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006930 kdgT CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010196 kdgT CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007889 kdgT CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008010 kdgT CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007554 kdgT CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007637 kdgT CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007295 kdgT CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007246 kdgT CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007080 kdgT CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029060 kdgT CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007774 kdgT CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008825 kdgT CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004546 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003621 kdgT CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003444 kdgT CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004609 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004565 kdgT CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004428 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004508 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178626 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004285 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004297 kdgT CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134932 kdgT CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001743 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004502 kdgT CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001933 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003195 CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002739 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006395 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001415 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003629 CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005245 kdgT CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064449 kdgT CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002439 kdgT CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002235 kdgT CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002500 kdgT CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009181 CDS
Person Uncurated Go view Shigella boydii 227 ADV-0004281 kdgT CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009806 kdgT CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005820 kdgT CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004335 kdgT CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074999 kdgT CDS
Person Approved Go view Shigella flexneri 301 ABT-0090203 kdgT CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003810 kdgT CDS
Person Approved Go view Shigella sonnei 046 ADD-0004441 kdgT CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0005744 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000907 kdgT CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21537mutantTn5 InsertionRequest the StrainABE-0012764kdgTkdgT::Tn5KAN-I-SceI at position 451 in Plus orientation ,- pKD465Blattner Laboratory
FB21538mutantTn5 InsertionRequest the StrainABE-0012764kdgTkdgT::Tn5KAN-I-SceI at position 451 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4096690 to 4107673
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012738rhaBCDScomplement40959794097448Upstream
ABE-0012745rhaSCDSforward40977364098572Upstream
ABE-0012747rhaRCDSforward40986464099494Upstream
ABE-0012749rhaTCDScomplement40994914100525Upstream
ABE-0012761sodACDSforward41008104101430Upstream
ABE-0012764kdgTCDSforward41016904102673Matches
ABE-0285653repeat_regionforward41026964102721Downstream
ABE-0012769yiiMCDSforward41028224103496Downstream
ABE-0285654repeat_regionforward41035074103590Downstream
ABE-0012772cpxACDScomplement41036024104975Downstream
ABE-0012774cpxRCDScomplement41049724105670Downstream
ABE-0174117cpxPCDSforward41058204106320Downstream
ABE-0285788cpxQncRNAforward41063304106387Downstream
ABE-0012786fieFCDSforward41064694107371Downstream
ABE-0012789pfkACDSforward41075524108514Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.