Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012786 (fieF) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012786 showshow history
Names
fieF cepA yiiP JW3886 ECK3907 b3915
Product
zinc transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4106469 4107371 903 301
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001505
EnteroFam0012786: Trusted threshold=764.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR002524 (IPR002524 Cation efflux protein) Apr 2008
Automated Process Approved IPR027470 (IPR027470 Cation efflux protein, cytoplasmic domain) Jul 2018
Automated Process Approved IPR027469 (IPR027469 Cation efflux transmembrane domain superfamily) Jul 2018
Automated Process Approved IPR036837 (IPR036837 Cation efflux protein, cytoplasmic domain superfamily) Jul 2018
Automated Process Approved PF16916 (PF16916 Dimerisation domain of Zinc Transporter) Jul 2018
Automated Process Approved PF01545 (PF01545 Cation efflux family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006812 cation transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002524
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002524
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002524
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002524
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655 		Aug 2006
Automated Process Approved GO molecular function GO:0008324 cation transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002524
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name fieF Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK3907 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym cepA Published Annotation - GenBank Accession Number: BX950851
Reference: Erwinia carotovora SCRI1043 		Sep 2007
Person Approved synonym JW3886 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym yiiP Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Approved locus tag b3915 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product zinc transporter Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name putative transport protein (CDF family) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name putative transport system permease protein Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Approved alternate product name iron and zinc efflux membrane transporter Published Annotation in EcoGene - EG Number: EG11873
Reference: Escherichia coli K-12 MG1655 		Aug 2006
Automated Process Approved alternate product name ferrous iron and zinc transporter Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Person Approved EnteroFam EnteroFam0012786: Trusted threshold=764.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001505
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR027469 Cation efflux transmembrane domain superfamily Protein Sequence Similarity - InterPro Domain: IPR027469
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR002524 Cation efflux protein Protein Sequence Similarity - InterPro Domain: IPR002524
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036837 Cation efflux protein, cytoplasmic domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036837
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR027470 Cation efflux protein, cytoplasmic domain Protein Sequence Similarity - InterPro Domain: IPR027470
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF16916 Dimerisation domain of Zinc Transporter Protein Sequence Similarity - PFAM Model Name: PF16916
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF01545 Cation efflux family Protein Sequence Similarity - PFAM Model Name: PF01545
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.2.A.4 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The Cation Diffusion Facilitator (CDF) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948413 Published Annotation - Entrez Gene Database ID: 948413
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P69380 Published Annotation - Swiss-Prot Accession Number: P69380 Jan 2006
Automated Process Approved db xref GI:1790349 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P69380 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0012786 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11873 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function putative transport; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note putative transport system permease protein; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76897.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002524
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006812 cation transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002524
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655 		Aug 2006
Automated Process Uncurated GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002524
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002524
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008324 cation transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002524
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001505 fieF CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000644 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001237 fieF CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000118 fieF CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001310 fieF CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001759 fieF CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001813 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000554 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004480 fieF CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004087 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004345 fieF CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000360 fieF CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0009202 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020381 fieF CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000158 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000172 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0296282 fieF CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000174 fieF CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000102 fieF CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001845 fieF CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007550 fieF CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004169 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007075 fieF CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003976 fieF CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000258 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010305 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006913 fieF CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006609 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081064 fieF CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004343 fieF CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004708 fieF CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006389 fieF CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007639 fieF CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004490 fieF CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008883 fieF CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001153 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008699 fieF CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007212 fieF CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007403 fieF CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006925 fieF CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010201 fieF CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007884 fieF CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008015 fieF CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007559 fieF CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007642 fieF CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007290 fieF CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007241 fieF CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007085 fieF CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029065 fieF CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007779 fieF CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008830 fieF CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004541 fieF CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003625 fieF CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003439 fieF CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004614 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004560 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004423 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004513 fieF CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178631 fieF CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004290 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004350 fieF CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134937 fieF CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001748 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004507 yiiP CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000863 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004270 fieF CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002331 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008917 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003035 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000040 fieF CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003160 fieF CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000824 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003985 fieF CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000169 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011609 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000671 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287181 fieF CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006921 yiiP CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064646 fieF CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002556 cepA CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002267 cepA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000687 fieF CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004599 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004866 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008471 fieF CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003754 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004640 fieF CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008701 fieF CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012714 yiiP CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010228 yiiP CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007487 fieF CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008748 fieF CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007826 fieF CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007662 fieF CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007357 fieF CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007859 fieF CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008739 fieF CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008643 fieF CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003943 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003901 fieF CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005054 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008883 fieF CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006694 fieF CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008342 fieF CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006934 fieF CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113041 fieF CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085282 fieF CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004890 fieF CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102515 fieF CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005096 fieF CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007833 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005944 fieF CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001056 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0268127 CDS
Person Approved Go view Shigella boydii 227 ADV-0004286 yiiP CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009811 fieF CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005815 fieF CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004330 yiiP CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074989 fieF CDS
Person Approved Go view Shigella flexneri 301 ABT-0090210 fieF CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003802 yiiP CDS
Person Approved Go view Shigella sonnei 046 ADD-0004446 fieF CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002789 VC2690 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000120 yiiP CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001345 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000276 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003184 fieF_1 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002793 fieF CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003699 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234398 fieF CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004191 fieF CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004132 fieF CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007769 fieF CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003213 fieF CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0115566 fieF CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007903 fieF CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006244 fieF CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000961 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005468 fieF CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007984 fieF CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029646 fieF CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005062 fieF CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004531 fieF CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004597 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004379 fieF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004015 fieF CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000080 fieF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000086 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004899 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0005708 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000861 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4101469 to 4112371
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012764kdgTCDSforward41016904102673Upstream
ABE-0285653repeat_regionforward41026964102721Upstream
ABE-0012769yiiMCDSforward41028224103496Upstream
ABE-0285654repeat_regionforward41035074103590Upstream
ABE-0012772cpxACDScomplement41036024104975Upstream
ABE-0012774cpxRCDScomplement41049724105670Upstream
ABE-0174117cpxPCDSforward41058204106320Upstream
ABE-0285788cpxQncRNAforward41063304106387Upstream
ABE-0012786fieFCDSforward41064694107371Matches
ABE-0012789pfkACDSforward41075524108514Downstream
ABE-0285655repeat_regionforward41085714108668Downstream
ABE-0012794sbpCDSforward41088344109823Downstream
ABE-0012797cdhCDSforward41099304110685Downstream
ABE-0285656repeat_regionforward41107104110728Downstream
ABE-0012799tpiACDScomplement41107404111507Downstream
ABE-0012802yiiQCDScomplement41116154112214Downstream
ABE-0012809yiiRCDSforward41123154112755Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.