Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012794 (sbp) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012794 showshow history
Names
sbp sbp1 JW3888 ECK3909 b3917
Product
periplasmic-binding component of an ABC superfamily sulfate/thiosulfate transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4108834 4109823 990 330
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001507
EnteroFam0012794: Trusted threshold=833.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR000957 (IPR000957 Sulphate/thiosulphate-binding, conserved site) Apr 2008
Automated Process Approved IPR006059 (IPR006059 Bacterial extracellular solute-binding protein) Apr 2008
Automated Process Approved IPR005669 (IPR005669 Thiosulphate/Sulfate-binding protein) Apr 2008
Automated Process Approved PF13531 (PF13531 Bacterial extracellular solute-binding protein) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006059
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008272 sulfate transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000957
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006790 sulfur compound metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000957
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0015419 ABC-type sulfate transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005669
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008271 secondary active sulfate transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000957
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006059
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name sbp Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK3909 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW3888 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym sbp1 Published Annotation - GenBank Accession Number: AL590842
Reference: Yersinia pestis CO92 		Sep 2007
Person Approved locus tag b3917 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product periplasmic-binding component of an ABC superfamily sulfate/thiosulfate transporter Published Annotation - EcoCyc Accession Number: EG10929
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Approved alternate product name periplasmic sulfate-binding protein Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name sulfate transport protein (ABC superfamily, peri_bind) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name sulfate transporter subunit; periplasmic-binding component of ABC superfamily Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Jan 2007
Automated Process Approved alternate product name sulfate transporter subunit Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Person Approved EnteroFam EnteroFam0012794: Trusted threshold=833.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001507
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF13531 Bacterial extracellular solute-binding protein Protein Sequence Similarity - PFAM Model Name: PF13531
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR005669 Thiosulphate/Sulfate-binding protein Protein Sequence Similarity - InterPro Domain: IPR005669
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000957 Sulphate/thiosulphate-binding, conserved site Protein Sequence Similarity - InterPro Domain: IPR000957
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006059 Bacterial extracellular solute-binding protein Protein Sequence Similarity - InterPro Domain: IPR006059
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated EC number 7.3.2.3 Published Annotation - EcoCyc Accession Number: EG10929
Reference: Escherichia coli K-12 MG1655 		Dec 2019
Person Uncurated MultiFun 4.3.A.1.p (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily, periplasmic binding component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.2 (location of gene products; periplasmic space) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.174 (transport; substrate; sulfate) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.8.2 (metabolism; metabolism of other compounds; sulfur metabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AG78 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1790351 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0012794 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10929 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AG78 Published Annotation - Swiss-Prot Accession Number: P0AG78 Jan 2006
Automated Process Approved db xref GeneID:948411 Published Annotation - Entrez Gene Database ID: 948411
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved function transport; Transport of small molecules: Anions Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note periplasmic sulfate-binding protein; periplasmic-binding component of ABC superfamily; GO_component: GO:0042597 - periplasmic space; GO_process: GO:0006790 - sulfur metabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76899.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Periplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006059
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006790 sulfur compound metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008272 sulfate transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000957
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000957
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006059
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0015419 ABC-type sulfate transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005669
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008271 secondary active sulfate transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000957
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001507 sbp CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000380 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001335 sbp CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001422 sbp CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000436 sbp CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001547 sbp CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004482 sbp CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004085 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004343 sbp CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000358 sbp CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005623 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0018548 sbp CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003188 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000170 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0296289 sbp CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000176 sbp CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000104 sbp CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001848 sbp CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007548 sbp CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004171 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007073 sbp CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003978 sbp CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000256 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010302 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006911 sbp CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006611 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081067 sbp CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004345 sbp CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004705 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006391 sbp CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007637 sbp CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004492 sbp CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008886 sbp CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001156 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008702 sbp CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007215 sbp CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007406 sbp CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006922 sbp CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010204 sbp CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007882 sbp CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008018 sbp CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007562 sbp CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007644 sbp CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007288 sbp CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007238 sbp CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007087 sbp CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029067 sbp CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007781 sbp CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008833 sbp CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004539 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003627 sbp CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003437 sbp CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004616 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004558 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004421 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004516 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178633 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004293 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004352 sbp CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134939 sbp CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001751 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004510 sbp CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003767 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000865 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004056 sbp CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002329 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007699 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003033 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000038 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003158 sbp CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000826 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003983 sbp CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0000171 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011607 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000669 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0287183 sbp CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006919 sbp CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063594 sbp CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001908 sbp CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002035 sbp CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004060 sbp CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008200 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0147703 sbp CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000310 sbp CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008473 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003752 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004643 sbp CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008703 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012722 sbp CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010220 sbp CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007485 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008750 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007824 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007664 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007359 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007861 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008741 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008645 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003945 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003903 sbp CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005057 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008885 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006692 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008344 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006936 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113034 sbp CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085280 sbp CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004893 sbp CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102521 sbp CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005094 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007831 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005946 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001058 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0268312 sbp CDS
Person Approved Go view Shigella boydii 227 ADV-0004288 sbp CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009814 sbp CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005812 sbp CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004328 sbp CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074986 sbp CDS
Person Approved Go view Shigella flexneri 301 ABT-0090212 sbp CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003800 sbp CDS
Person Approved Go view Shigella sonnei 046 ADD-0004448 sbp CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000115 sbp CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003404 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000290 sbp1 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003186 sbp CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002795 sbp CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003701 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234406 sbp CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004193 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004129 sbp CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007767 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003211 sbp CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0115577 sbp CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007900 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006242 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000963 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005466 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029644 sbp CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005060 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004528 sbp CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004594 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004381 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004017 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000082 sbp CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000088 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004896 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0005006 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001066 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21545mutantTn5 InsertionRequest the StrainABE-0012794sbpsbp::Tn5KAN-I-SceI at position 254 in Plus orientation ,+ pKD460Blattner Laboratory
FB21546mutantTn5 InsertionRequest the StrainABE-0012794sbpsbp::Tn5KAN-I-SceI at position 254 in Plus orientation ,- pKD465Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4103834 to 4114823
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012772cpxACDScomplement41036024104975Upstream
ABE-0012774cpxRCDScomplement41049724105670Upstream
ABE-0174117cpxPCDSforward41058204106320Upstream
ABE-0285788cpxQncRNAforward41063304106387Upstream
ABE-0012786fieFCDSforward41064694107371Upstream
ABE-0012789pfkACDSforward41075524108514Upstream
ABE-0285655repeat_regionforward41085714108668Upstream
ABE-0012794sbpCDSforward41088344109823Matches
ABE-0012797cdhCDSforward41099304110685Downstream
ABE-0285656repeat_regionforward41107104110728Downstream
ABE-0012799tpiACDScomplement41107404111507Downstream
ABE-0012802yiiQCDScomplement41116154112214Downstream
ABE-0012809yiiRCDSforward41123154112755Downstream
ABE-0012813yiiSCDSforward41129674113266Downstream
ABE-0012816uspDCDSforward41132934113721Downstream
ABE-0012818fprCDScomplement41137264114472Downstream
ABE-0012821glpXCDScomplement41145694115579Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.