Escherichia coli K-12 MG1655
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012797 (cdh) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012797 showshow history
Names
cdh pnuE ushB JW3889 ECK3910 b3918
Product
CDP-diacylglycerol phosphotidylhydrolase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4109930 4110685 756 252
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001508
EnteroFam0012797: Trusted threshold=670; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043).
Jan 2006
Automated Process Approved IPR003763 (IPR003763 CDP-diacylglycerol pyrophosphatase) Apr 2008
Automated Process Approved IPR015993 (IPR015993 CDP-diacylglycerol pyrophosphatase, proteobacterial) Jul 2018
Automated Process Approved IPR036265 (IPR036265 HIT-like superfamily) Jul 2018
Automated Process Approved PF02611 (PF02611 CDP-diacylglycerol pyrophosphatase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008654 phospholipid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003763
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003763
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0008715 CDP-diacylglycerol diphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003763
Reference: Escherichia coli K-12 MG1655
Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name cdh Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655
Sep 2007
Person Approved synonym JW3889 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym ushB Published Annotation - GenBank Accession Number: AE006468
Reference: Salmonella Typhimurium LT2
Sep 2007
Person Approved synonym ECK3910 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym pnuE Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved locus tag b3918 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product CDP-diacylglycerol phosphotidylhydrolase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name CDP-diacylglycerol phosphotidylhydrolase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0012797: Trusted threshold=670; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001508
Reference: EnteroFams
Jan 2006
Automated Process Approved protein family IPR003763 CDP-diacylglycerol pyrophosphatase Protein Sequence Similarity - InterPro Domain: IPR003763
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR015993 CDP-diacylglycerol pyrophosphatase, proteobacterial Protein Sequence Similarity - InterPro Domain: IPR015993
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family PF02611 CDP-diacylglycerol pyrophosphatase Protein Sequence Similarity - PFAM Model Name: PF02611
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR036265 HIT-like superfamily Protein Sequence Similarity - InterPro Domain: IPR036265
Reference: Escherichia coli K-12 MG1655
Jul 2018
Other
Person Approved EC number 3.6.1.26 Published Annotation - Swiss-Prot Accession Number: P06282 Feb 2006
Person Uncurated MultiFun 1.5.4 (metabolism; building block biosynthesis; fatty acid and phosphatidic acid) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref EcoGene:EG10138 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GeneID:948410 Published Annotation - Entrez Gene Database ID: 948410
Reference: Escherichia coli K-12 MG1655
Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P06282 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GI:1790352 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref ASAP:ABE-0012797 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved db xref UniProtKB:P06282 Published Annotation - Swiss-Prot Accession Number: P06282 Jan 2005
Person Approved function enzyme; Fatty acid and phosphatidic acid biosynthesis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Automated Process Approved protein id AAC76900.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.50
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655
Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655
Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655
Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0008654 phospholipid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003763
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003763
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0008715 CDP-diacylglycerol diphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003763
Reference: Escherichia coli K-12 MG1655
Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001508 cdh CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002267 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002233 cdh CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002079 cdh CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002140 cdh CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002011 cdh CDS
Ortholog
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004342 cdh CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0000357 cdh CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007518 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0019093 cdh CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001534 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000169 cdh CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0296293 cdh CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000105 cdh CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007547 cdh CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004172 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003979 cdh CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000255 cdh CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010300 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006910 cdh CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006612 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081068 cdh CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004346 cdh CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004704 cdh CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006392 cdh CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007636 cdh CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004493 cdh CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008887 cdh CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001157 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008703 cdh CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007216 cdh CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007407 cdh CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006921 cdh CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010205 cdh CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007881 cdh CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008019 cdh CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007563 cdh CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007645 cdh CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007287 cdh CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007237 cdh CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007088 cdh CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029068 cdh CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007782 cdh CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008834 cdh CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004538 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003628 cdh CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003436 cdh CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004617 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004557 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004420 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004517 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178634 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004294 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004353 cdh CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134940 cdh CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001752 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004511 cdh CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003547 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004055 cdh CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002328 cdh CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005964 CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061813 cdh CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003634 CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000405 cdh CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001837 cdh CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006196 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003751 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004644 cdh CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012727 ushB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010216 ushB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003946 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003904 cdh CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005058 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113033 cdh CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085279 cdh CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004894 ushB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102524 cdh CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001117 CDS
Person Approved Go view Shigella boydii 227 ADV-0004289 cdh CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005811 cdh CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074985 cdh CDS
Person Approved Go view Shigella flexneri 301 ABT-0090213 cdh CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003799 cdh CDS
Person Approved Go view Shigella sonnei 046 ADD-0004449 cdh CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000148 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011710 cdh CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001183 cdh CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001492 cdh CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000719 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242340 cdh CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008200 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004545 cdh CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007472 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003407 cdh CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128729 cdh CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005880 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007251 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001412 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006097 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007917 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033637 cdh CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006772 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004362 cdh CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004007 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006779 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0008094 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003944 cdh CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004800 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000133 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0005000 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001068 cdh CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)

Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4104930 to 4115685
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012772cpxACDScomplement41036024104975Upstream
ABE-0012774cpxRCDScomplement41049724105670Upstream
ABE-0174117cpxPCDSforward41058204106320Upstream
ABE-0285788cpxQncRNAforward41063304106387Upstream
ABE-0012786fieFCDSforward41064694107371Upstream
ABE-0012789pfkACDSforward41075524108514Upstream
ABE-0285655repeat_regionforward41085714108668Upstream
ABE-0012794sbpCDSforward41088344109823Upstream
ABE-0012797cdhCDSforward41099304110685Matches
ABE-0285656repeat_regionforward41107104110728Downstream
ABE-0012799tpiACDScomplement41107404111507Downstream
ABE-0012802yiiQCDScomplement41116154112214Downstream
ABE-0012809yiiRCDSforward41123154112755Downstream
ABE-0012813yiiSCDSforward41129674113266Downstream
ABE-0012816uspDCDSforward41132934113721Downstream
ABE-0012818fprCDScomplement41137264114472Downstream
ABE-0012821glpXCDScomplement41145694115579Downstream
ABE-0285657repeat_regionforward41156774115706Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.