Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012799 (tpiA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012799 showshow history
Names
tpiA tpi JW3890 ECK3911 b3919
Product
triosephosphate isomerase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4110740 4111507 768 256
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001509
EnteroFam0012799: Trusted threshold=710.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR000652 (IPR000652 Triosephosphate isomerase) Apr 2008
Automated Process Approved IPR013785 (IPR013785 Aldolase-type TIM barrel) Apr 2008
Automated Process Approved IPR035990 (IPR035990 Triosephosphate isomerase superfamily) Jul 2018
Automated Process Approved PF00121 (PF00121 Triosephosphate isomerase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006096 glycolytic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000652
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004807 triose-phosphate isomerase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000652
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name tpiA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK3911 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW3890 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym tpi Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b3919 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product triosephosphate isomerase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name triosephosphate isomerase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0012799: Trusted threshold=710.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001509
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR035990 Triosephosphate isomerase superfamily Protein Sequence Similarity - InterPro Domain: IPR035990
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR013785 Aldolase-type TIM barrel Protein Sequence Similarity - InterPro Domain: IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00121 Triosephosphate isomerase Protein Sequence Similarity - PFAM Model Name: PF00121
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000652 Triosephosphate isomerase Protein Sequence Similarity - InterPro Domain: IPR000652
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 5.3.1.1 Published Annotation - Swiss-Prot Accession Number: P0A858 Feb 2006
Person Uncurated MultiFun 1.3.1 (metabolism; energy metabolism, carbon; glycolysis) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A858 Published Annotation - Swiss-Prot Accession Number: P0A858 Jan 2006
Automated Process Approved db xref GI:1790353 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948409 Published Annotation - Entrez Gene Database ID: 948409
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A858 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0012799 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11015 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Energy metabolism, carbon: Glycolysis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Uncurated molecular interaction Interacts with the product of dnaK ASAP:52:(interacting residues not known); by MALDI-TOF Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110 		Mar 2005
Person Uncurated molecular interaction Interacts with the product of yfiD ASAP:8489:(interacting residues not known); by MALDI-TOF and LC-MS Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110 		Mar 2005
Person Uncurated molecular interaction Interacts with the product of pepT ASAP:3800:(interacting residues not known); by MALDI-TOF and LC-MS Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110 		Mar 2005
Person Uncurated molecular interaction Interacts with the product of pflB ASAP:3071:(interacting residues not known); by MALDI-TOF and LC-MS Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110 		Mar 2005
Automated Process Approved note GO_process: GO:0006096 - glycolysis Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76901.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0006096 glycolytic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000652
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004807 triose-phosphate isomerase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000652
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001509 tpiA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000642 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000184 tpiA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000168 tpiA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000438 tpiA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000535 tpiA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001807 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000537 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129577 tpiA CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0105011 tpiA CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104417 tpiA CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004484 tpiA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004083 tpiA CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004335 tpiA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000354 tpiA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004498 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020391 tpiA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000175 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000167 tpiA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0296307 tpiA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000185 tpiA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000111 tpiA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001855 tpiA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007546 tpiA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004173 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007071 tpiA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003980 tpiA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000254 tpiA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010299 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006909 tpiA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006613 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081069 tpiA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004347 tpiA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004703 tpiA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006393 tpiA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007635 tpiA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004494 tpiA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008888 tpiA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001158 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008704 tpiA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007217 tpiA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007408 tpiA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006920 tpiA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010206 tpiA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007880 tpiA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008020 tpiA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007564 tpiA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007646 tpiA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007286 tpiA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007236 tpiA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007089 tpiA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029069 tpiA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007783 tpiA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008835 tpiA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004537 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003629 tpiA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003435 tpiA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004618 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004556 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004419 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004518 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178635 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004295 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004354 tpiA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134941 tpiA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001753 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004512 tpiA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003768 tpiA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000866 tpiA CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004053 tpiA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002326 tpiA CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008911 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003031 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000036 tpiA CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003156 tpiA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000828 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003981 tpiA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000173 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011605 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000667 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0287186 tpiA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006917 tpiA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064609 tpiA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002527 tpiA CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001173 tpiA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000666 tpiA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004619 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0147701 tpiA CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004570 tpiA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008491 tpiA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003748 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004661 tpiA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008722 tpiA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012780 tpiA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010168 tpiA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007466 tpiA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008768 tpiA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007805 tpiA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007682 tpiA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007378 tpiA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007880 tpiA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008759 tpiA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008664 tpiA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003962 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003921 tpiA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005076 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008904 tpiA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006674 tpiA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008361 tpiA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006953 tpiA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113002 tpiA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085261 tpiA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004912 tpiA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102574 tpiA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005076 tpiA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007812 tpiA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005965 tpiA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001059 tpiA CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264763 tpiA CDS
Person Approved Go view Shigella boydii 227 ADV-0004290 tpiA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009816 tpiA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005810 tpiA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004323 tpiA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074984 tpiA CDS
Person Approved Go view Shigella flexneri 301 ABT-0090214 tpiA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003798 tpiA CDS
Person Approved Go view Shigella sonnei 046 ADD-0004450 tpiA CDS
Person Uncurated Go view Sodalis glossinidius morsitans AEB-0002253 CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002769 VC2670 CDS
Person Uncurated Go view Wigglesworthia brevipalpis ACB-0135773 tpiA CDS
Person Approved Go view Wigglesworthia morsitans AEQ-0000437 tpiA CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000308 tpiA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003406 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000295 tpi CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003188 tpiA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002796 tpiA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003702 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234426 tpiA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004199 tpiA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004122 tpiA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007761 tpiA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003205 tpiA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0115600 tpiA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007894 tpiA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006236 tpiA CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005460 tpiA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007120 tpiA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029638 tpiA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005053 tpiA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004521 tpiA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004586 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004387 tpiA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004023 tpiA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000088 tpiA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000097 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004888 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0004992 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001070 tpiA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21547mutantTn5 InsertionRequest the StrainABE-0012799tpiAtpiA::Tn5KAN-I-SceI at position 275 in Minus orientation ,+ pKD460Blattner Laboratory
FB21548mutantTn5 InsertionRequest the StrainABE-0012799tpiAtpiA::Tn5KAN-I-SceI at position 275 in Minus orientation ,- pKD465Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4105740 to 4116507
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0174117cpxPCDSforward41058204106320Downstream
ABE-0285788cpxQncRNAforward41063304106387Downstream
ABE-0012786fieFCDSforward41064694107371Downstream
ABE-0012789pfkACDSforward41075524108514Downstream
ABE-0285655repeat_regionforward41085714108668Downstream
ABE-0012794sbpCDSforward41088344109823Downstream
ABE-0012797cdhCDSforward41099304110685Downstream
ABE-0285656repeat_regionforward41107104110728Downstream
ABE-0012799tpiACDScomplement41107404111507Matches
ABE-0012802yiiQCDScomplement41116154112214Upstream
ABE-0012809yiiRCDSforward41123154112755Upstream
ABE-0012813yiiSCDSforward41129674113266Upstream
ABE-0012816uspDCDSforward41132934113721Upstream
ABE-0012818fprCDScomplement41137264114472Upstream
ABE-0012821glpXCDScomplement41145694115579Upstream
ABE-0285657repeat_regionforward41156774115706Upstream
ABE-0012825glpKCDScomplement41157144117222Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.