Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012818 (fpr) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012818 showshow history
Names
fpr flxR JW3895 ECK3916 mvrA b3924
Product
ferredoxin-NADP reductase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4113726 4114472 747 249
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001512
EnteroFam0012818: Trusted threshold=676.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR010916 (IPR010916 TonB box, conserved site) Apr 2008
Automated Process Approved IPR008333 (IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain) Apr 2008
Automated Process Approved IPR001433 (IPR001433 Oxidoreductase FAD/NAD(P)-binding) Apr 2008
Automated Process Approved IPR017938 (IPR017938 Riboflavin synthase-like beta-barrel) Jul 2018
Automated Process Approved IPR039261 (IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain) Jul 2018
Automated Process Approved PF00175 (PF00175 Oxidoreductase NAD-binding domain) Jul 2018
Automated Process Approved PF00970 (PF00970 Oxidoreductase FAD-binding domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006805 xenobiotic metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001433
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008333
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008333
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name fpr Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym mvrA Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Automated Process Approved synonym flxR Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK3916 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW3895 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3924 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product ferredoxin-NADP reductase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name ferredoxin-NADP reductase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0012818: Trusted threshold=676.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001512
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR010916 TonB box, conserved site Protein Sequence Similarity - InterPro Domain: IPR010916
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Protein Sequence Similarity - InterPro Domain: IPR008333
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001433 Oxidoreductase FAD/NAD(P)-binding Protein Sequence Similarity - InterPro Domain: IPR001433
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00175 Oxidoreductase NAD-binding domain Protein Sequence Similarity - PFAM Model Name: PF00175
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Protein Sequence Similarity - InterPro Domain: IPR039261
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00970 Oxidoreductase FAD-binding domain Protein Sequence Similarity - PFAM Model Name: PF00970
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR017938 Riboflavin synthase-like beta-barrel Protein Sequence Similarity - InterPro Domain: IPR017938
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Uncurated EC number 1.-.-.- Published Annotation - Database Name: EC2GO: GO:0016491
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 1.18.1.2 Published Annotation - Swiss-Prot Accession Number: P28861 Feb 2006
Person Uncurated MultiFun 1.7.1 (metabolism; central intermediary metabolism; unassigned reversible reactions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 5.6.2 (cell processes; protection; detoxification (xenobiotic metabolism)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948414 Published Annotation - Entrez Gene Database ID: 948414
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1790359 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P28861 Published Annotation - Swiss-Prot Accession Number: P28861 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P28861 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11518 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0012818 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Central intermediary metabolism: Pool, multipurpose conversions Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_process: GO:0006805 - xenobiotic metabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76906.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0006805 xenobiotic metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008333
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001433
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008333
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001512 fpr CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000639 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000205 fpr CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000179 fpr CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001137 fpr CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000364 fpr CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001804 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000533 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129851 fpr CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0105253 fpr CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104698 fpr CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004487 fpr CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004080 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004331 fpr CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000350 fpr CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004502 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020396 fpr CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000178 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000164 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0296319 fpr CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000188 fpr CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000114 fpr CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001860 fpr CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007541 fpr CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004178 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007066 fpr CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003985 fpr CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000249 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010293 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006904 fpr CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006618 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081074 fpr CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004352 fpr CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004698 fpr CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006398 fpr CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007630 fpr CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004499 fpr CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008893 fpr CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001163 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008709 fpr CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007222 fpr CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007413 fpr CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006915 fpr CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010211 fpr CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007875 fpr CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008025 fpr CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007569 fpr CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007651 fpr CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007281 fpr CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007231 fpr CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007094 fpr CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029074 fpr CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007788 fpr CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008840 fpr CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004532 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003634 fpr CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003430 fpr CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004623 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004551 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004414 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004523 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178640 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004300 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004359 fpr CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134946 fpr CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001758 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004517 fpr CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003771 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000869 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004050 fpr CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002323 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008906 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003028 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000033 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003153 fpr CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000832 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003978 fpr CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0000176 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011603 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000664 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287190 fpr CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006913 fpr CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064606 fpr CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002525 fpr CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001171 fpr CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000663 fpr CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004624 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0147696 fpr CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004718 fnr-2 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008494 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003745 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004664 fpr CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008725 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012791 fpr CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010158 fpr CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007463 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008771 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007802 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007685 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007381 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007883 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008762 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008667 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003965 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003924 fpr CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005080 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008907 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006671 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008364 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006956 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112998 fpr CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085258 fpr CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004916 fpr CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102583 fpr CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005073 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007809 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005968 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001062 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264302 fpr CDS
Person Approved Go view Shigella boydii 227 ADV-0004295 fpr CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009823 fpr CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005805 fpr CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004316 fpr CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074979 fpr CDS
Person Approved Go view Shigella flexneri 301 ABT-0090218 fpr CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004248 fpr CDS
Person Approved Go view Shigella sonnei 046 ADD-0004455 fpr CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000438 fpr CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000315 fpr CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002368 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000303 fpr CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003191 fpr_1 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002799 fpr CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002675 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234435 fpr CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004202 fpr CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004118 fpr CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007758 fpr CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003202 fpr CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0115609 fpr CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007891 fpr CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006233 fpr CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002229 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005457 fpr CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007123 fpr CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029635 fpr CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005050 fpr CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004517 fpr CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004582 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004390 fpr CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004026 fpr CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000091 fpr CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000101 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004884 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0004980 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001073 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21549mutantTn5 InsertionRequest the StrainABE-0012818fprfpr::Tn5KAN-I-SceI at position 649 in Plus orientation ,+ pKD460Blattner Laboratory
FB21550mutantTn5 InsertionRequest the StrainABE-0012818fprfpr::Tn5KAN-I-SceI at position 649 in Plus orientation ,- pKD465Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4108726 to 4119472
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012794sbpCDSforward41088344109823Downstream
ABE-0012797cdhCDSforward41099304110685Downstream
ABE-0285656repeat_regionforward41107104110728Downstream
ABE-0012799tpiACDScomplement41107404111507Downstream
ABE-0012802yiiQCDScomplement41116154112214Downstream
ABE-0012809yiiRCDSforward41123154112755Downstream
ABE-0012813yiiSCDSforward41129674113266Downstream
ABE-0012816uspDCDSforward41132934113721Downstream
ABE-0012818fprCDScomplement41137264114472Matches
ABE-0012821glpXCDScomplement41145694115579Upstream
ABE-0285657repeat_regionforward41156774115706Upstream
ABE-0012825glpKCDScomplement41157144117222Upstream
ABE-0012828glpFCDScomplement41172454118090Upstream
ABE-0012835zapBCDSforward41185154118760Upstream
ABE-0012837rraACDScomplement41188454119330Upstream
ABE-0012841menACDScomplement41194234120349Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.