Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012828 (glpF) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012828 showshow history
Names
glpF JW3898 ECK3919 b3927
Product
glycerol facilitator
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4117245 4118090 846 282
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000425 (IPR000425 Major intrinsic protein) Apr 2008
Automated Process Approved IPR012269 (IPR012269 (DEPRECATED) Aquaporin) Apr 2008
Automated Process Approved IPR023271 (IPR023271 Aquaporin-like) Jul 2018
Automated Process Approved PF00230 (PF00230 Major intrinsic protein) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006071 glycerol metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000425
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000425
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012269
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000425
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0015267 channel activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000425
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000425
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name glpF Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK3919 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW3898 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3927 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product glycerol facilitator Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name facilitated diffusion of glycerol Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name MIP channel, glycerol diffusion Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family IPR012269 (DEPRECATED) Aquaporin Protein Sequence Similarity - InterPro Domain: IPR012269
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00230 Major intrinsic protein Protein Sequence Similarity - PFAM Model Name: PF00230
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR023271 Aquaporin-like Protein Sequence Similarity - InterPro Domain: IPR023271
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000425 Major intrinsic protein Protein Sequence Similarity - InterPro Domain: IPR000425
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 1.7.6 (metabolism; central intermediary metabolism; glycerol metabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.4 (metabolism; building block biosynthesis; fatty acid and phosphatidic acid) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.1.A.8 (transport; Channel-type Transporters; alpha-type channels; The Major Intrinsic Protein (MIP) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.77 (transport; substrate; glycerol) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948422 Published Annotation - Entrez Gene Database ID: 948422
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0AER0 Published Annotation - Swiss-Prot Accession Number: P0AER0 Jan 2006
Automated Process Approved db xref GI:1790362 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AER0 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10396 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0012828 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Transport of small molecules: Carbohydrates, organic acids, alcohols Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note facilitated diffusion of glycerol; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0006071 - glycerol metabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76909.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000425
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0006071 glycerol metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000425
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012269
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000425
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000425
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0015267 channel activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000425
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000636 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000502 glpF CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000709 glpF CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001134 glpF CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000773 glpF CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001801 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000527 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129576 glpF CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104416 glpF CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004490 glpF CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004077 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000347 glpF CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004505 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0020399 glpF CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000181 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000161 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0296338 glpF CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000195 glpF CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000120 glpF CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001863 glpF CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007538 glpF CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004181 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007063 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003988 glpF CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000246 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010290 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006901 glpF CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006621 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081077 glpF CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004355 glpF CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004695 glpF CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006401 glpF CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007627 glpF CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004502 glpF CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008896 glpF CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001166 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008712 glpF CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007225 glpF CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007416 glpF CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006912 glpF CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010214 glpF CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007872 glpF CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008028 glpF CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007572 glpF CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007654 glpF CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007278 glpF CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007228 glpF CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007097 glpF CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029078 glpF CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007791 glpF CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008843 glpF CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004529 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003637 glpF CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003427 glpF CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004626 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004548 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004411 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004526 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178645 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004303 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004362 glpF CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134949 glpF CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001761 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004520 glpF CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003775 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000874 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004058 glpF CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002319 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008903 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003024 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000029 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003149 glpF CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000836 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003974 glpF CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000180 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011599 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000660 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287194 glpF CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006909 glpF CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064603 glpF CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002523 glpF CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001169 glpF CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000660 glpF CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004627 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0147690 glpF CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004240 glpF CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008497 glpF CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003742 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004667 glpF CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008728 glpF CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012802 glpF CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010147 glpF CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007460 glpF CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008774 glpF CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007799 glpF CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007688 glpF CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007384 glpF CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007886 glpF CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008765 glpF CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008670 glpF CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003968 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003927 glpF CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005083 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008910 glpF CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006668 glpF CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008367 glpF CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006959 glpF CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112990 glpF CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0085255 glpF CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004919 glpF CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102590 glpF CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005070 glpF CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007806 glpF CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005971 glpF CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001067 CDS
Person Approved Go view Shigella boydii 227 ADV-0004298 glpF CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009826 glpF CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005802 glpF CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004313 glpF CDS
Person Uncurated Go view Shigella flexneri 2457T ABQ-0074975 glpF pseudogene
Person Uncurated Go view Shigella flexneri 301 ABT-0090221 glpF CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004251 glpF CDS
Person Approved Go view Shigella sonnei 046 ADD-0004458 glpF CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000323 glpF CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002364 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000317 glpF CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003195 glpF CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002804 glpF CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002671 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234438 glpF CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004205 glpF CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004115 glpF CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007755 glpF CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003200 glpF CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0115615 glpF CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007888 glpF CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008819 glpF CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002232 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005454 glpF CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007126 glpF CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029632 glpF CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005047 glpF CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004514 glpF CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004579 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004393 glpF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004029 glpF CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000094 glpF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000104 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004881 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0005516 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000723 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21555mutantTn5 InsertionRequest the StrainABE-0012828glpFglpF::Tn5KAN-I-SceI at position 575 in Plus orientation ,+ pKD460Blattner Laboratory
FB21556mutantTn5 InsertionRequest the StrainABE-0012828glpFglpF::Tn5KAN-I-SceI at position 575 in Plus orientation ,- pKD465Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4112245 to 4123090
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012809yiiRCDSforward41123154112755Downstream
ABE-0012813yiiSCDSforward41129674113266Downstream
ABE-0012816uspDCDSforward41132934113721Downstream
ABE-0012818fprCDScomplement41137264114472Downstream
ABE-0012821glpXCDScomplement41145694115579Downstream
ABE-0285657repeat_regionforward41156774115706Downstream
ABE-0012825glpKCDScomplement41157144117222Downstream
ABE-0012828glpFCDScomplement41172454118090Matches
ABE-0012835zapBCDSforward41185154118760Upstream
ABE-0012837rraACDScomplement41188454119330Upstream
ABE-0012841menACDScomplement41194234120349Upstream
ABE-0012843hslUCDScomplement41204164121747Upstream
ABE-0012845hslVCDScomplement41217574122287Upstream
ABE-0012850ftsNCDScomplement41223804123339Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.