Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012841 (menA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012841 showshow history
Names
menA yiiW JW3901 ECK3922 b3930
Product
1,4-dihydroxy-2-naphthoate octaprenyltransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4119423 4120349 927 309
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001516
EnteroFam0012841: Trusted threshold=743.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR000537 (IPR000537 UbiA prenyltransferase family) Apr 2008
Automated Process Approved IPR004657 (IPR004657 1,4-dihydroxy-2-naphthoate octaprenyltransferase) Apr 2008
Automated Process Approved PF01040 (PF01040 UbiA prenyltransferase family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009234 menaquinone biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004657
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000537
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000537
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004659 prenyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000537
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016740 transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004657
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name menA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK3922 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW3901 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yiiW Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b3930 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product 1,4-dihydroxy-2-naphthoate octaprenyltransferase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name 1,4-dihydroxy-2-naphthoate --> dimethylmenaquinone Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name 1,4-dihydroxy-2-naphthoate octaprenyltransferase Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0012841: Trusted threshold=743.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001516
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF01040 UbiA prenyltransferase family Protein Sequence Similarity - PFAM Model Name: PF01040
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR004657 1,4-dihydroxy-2-naphthoate octaprenyltransferase Protein Sequence Similarity - InterPro Domain: IPR004657
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000537 UbiA prenyltransferase family Protein Sequence Similarity - InterPro Domain: IPR000537
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 2.5.-.- Published Annotation - Database Name: EC2GO: GO:0016765
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 2.5.1.- Published Annotation - Swiss-Prot Accession Number: P32166 Feb 2006
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.7 (metabolism; energy metabolism, carbon; anaerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.3.11 (metabolism; building block biosynthesis; cofactor, small molecule carrier; menaquinone, ubiquinone) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P32166 Published Annotation - Swiss-Prot Accession Number: P32166 Jan 2005
Automated Process Approved db xref EcoGene:EG11880 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948418 Published Annotation - Entrez Gene Database ID: 948418
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1790365 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P32166 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0012841 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Biosynthesis of cofactors, carriers: Menaquinone, ubiquinone Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note 1,4-dihydroxy-2-naphthoate --> dimethylmenaquinone; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0009061 - anaerobic respiration Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76912.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009234 menaquinone biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004657
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000537
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004659 prenyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000537
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000537
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0016740 transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004657
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001516 menA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000633 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001818 menA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001877 menA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001485 menA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001887 menA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001798 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000524 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004493 menA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004074 menA CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004326 menA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000343 menA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004508 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020405 menA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000185 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000158 menA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001867 menA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007535 menA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004184 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007060 menA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003990 menA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000243 menA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010286 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006898 menA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006624 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081081 menA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004358 menA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004692 menA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006404 menA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007624 menA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004505 menA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008900 menA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001173 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008717 menA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007230 menA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007421 menA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006907 menA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010219 menA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007867 menA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008033 menA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007577 menA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007659 menA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007273 menA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007223 menA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007102 menA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029084 menA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007794 menA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008847 menA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004526 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003640 menA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003424 menA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004629 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004545 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004408 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004530 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178648 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004306 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004367 menA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134954 menA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001767 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004524 menA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003778 menA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000877 menA CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004273 menA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002316 menA CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008899 CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064600 menA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002521 menA CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003225 menA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000657 menA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004631 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0147681 menA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008500 menA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003738 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004671 menA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008732 menA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012812 menA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010139 menA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007457 menA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008778 menA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007795 menA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007691 menA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007388 menA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007890 menA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008769 menA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008673 menA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003971 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003930 menA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005088 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008914 menA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006665 menA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008370 menA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006962 menA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112987 menA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085252 menA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004924 menA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102605 menA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005067 menA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007802 menA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005975 menA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001070 menA CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265489 CDS
Person Approved Go view Shigella boydii 227 ADV-0004301 menA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009829 menA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005799 menA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004300 menA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074972 menA CDS
Person Approved Go view Shigella flexneri 301 ABT-0090224 menA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004254 menA CDS
Person Approved Go view Shigella sonnei 046 ADD-0004461 menA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002772 VC2673 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000333 menA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002361 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000326 menA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003198 menA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002807 menA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002668 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234464 menA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004215 menA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000322 menA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007746 menA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003144 menA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0115657 menA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007879 menA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008806 menA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002243 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005441 menA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007135 menA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029886 menA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005034 menA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004504 menA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004567 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008835 menA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004038 menA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000103 menA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000112 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004872 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0005697 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000858 menA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21559mutantTn5 InsertionRequest the StrainABE-0012841menAmenA::Tn5KAN-I-SceI at position 530 in Plus orientation ,- pKD465Blattner Laboratory
FB21560mutantTn5 InsertionRequest the StrainABE-0012841menAmenA::Tn5KAN-I-SceI at position 530 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4114423 to 4125349
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012818fprCDScomplement41137264114472Downstream
ABE-0012821glpXCDScomplement41145694115579Downstream
ABE-0285657repeat_regionforward41156774115706Downstream
ABE-0012825glpKCDScomplement41157144117222Downstream
ABE-0012828glpFCDScomplement41172454118090Downstream
ABE-0012835zapBCDSforward41185154118760Downstream
ABE-0012837rraACDScomplement41188454119330Downstream
ABE-0012841menACDScomplement41194234120349Matches
ABE-0012843hslUCDScomplement41204164121747Upstream
ABE-0012845hslVCDScomplement41217574122287Upstream
ABE-0012850ftsNCDScomplement41223804123339Upstream
ABE-0012853cytRCDScomplement41234314124456Upstream
ABE-0012860priACDScomplement41246124126810Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.