Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012889 (metL) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012889 showshow history
Names
metL JW3911 ECK3932 metM b3940
Product
bifunctional aspartokinase/homoserine dehydrogenase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4129835 4132267 2433 811
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001524
EnteroFam0012889: Trusted threshold=2272.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001341 (IPR001341 Aspartate kinase) Apr 2008
Automated Process Approved IPR001342 (IPR001342 Homoserine dehydrogenase, catalytic) Apr 2008
Automated Process Approved IPR011147 (IPR011147 Bifunctional aspartokinase/homoserine dehydrogenase I) Apr 2008
Automated Process Approved IPR001048 (IPR001048 Aspartate/glutamate/uridylate kinase) Apr 2008
Automated Process Approved IPR005106 (IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding) Apr 2008
Automated Process Approved IPR036291 (IPR036291 NAD(P)-binding domain superfamily) Jul 2018
Automated Process Approved IPR036393 (IPR036393 Acetylglutamate kinase-like superfamily) Jul 2018
Automated Process Approved PF00696 (PF00696 Amino acid kinase family) Jul 2018
Automated Process Approved PF03447 (PF03447 Homoserine dehydrogenase, NAD binding domain) Jul 2018
Automated Process Approved PF00742 (PF00742 Homoserine dehydrogenase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005106, IPR001342
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0009086 methionine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009067 aspartate family amino acid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011147
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0006520 cellular amino acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001342
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0009090 homoserine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008652 cellular amino acid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001341
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0050661 NADP binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005106
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005106
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004072 aspartate kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001341
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004412 homoserine dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001342
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name metL Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW3911 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK3932 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym metM Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b3940 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product bifunctional aspartokinase/homoserine dehydrogenase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Apr 2007
Automated Process Approved alternate product name fused aspartokinase II/homoserine dehydrogenase II Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved alternate product name aspartokinase II and homoserine dehydrogenase II Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name bifunctional: aspartokinase II (N-terminal); homoserine dehydrogenase II (C-terminal) Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0012889: Trusted threshold=2272.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001524
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR001341 Aspartate kinase Protein Sequence Similarity - InterPro Domain: IPR001341
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00696 Amino acid kinase family Protein Sequence Similarity - PFAM Model Name: PF00696
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF03447 Homoserine dehydrogenase, NAD binding domain Protein Sequence Similarity - PFAM Model Name: PF03447
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00742 Homoserine dehydrogenase Protein Sequence Similarity - PFAM Model Name: PF00742
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036393 Acetylglutamate kinase-like superfamily Protein Sequence Similarity - InterPro Domain: IPR036393
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036291 NAD(P)-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036291
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001342 Homoserine dehydrogenase, catalytic Protein Sequence Similarity - InterPro Domain: IPR001342
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011147 Bifunctional aspartokinase/homoserine dehydrogenase I Protein Sequence Similarity - InterPro Domain: IPR011147
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001048 Aspartate/glutamate/uridylate kinase Protein Sequence Similarity - InterPro Domain: IPR001048
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding Protein Sequence Similarity - InterPro Domain: IPR005106
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 2.7.2.4 Published Annotation - Swiss-Prot Accession Number: P00562 Feb 2006
Person Approved EC number 1.1.1.3 Published Annotation - Swiss-Prot Accession Number: P00562 Feb 2006
Automated Process Uncurated EC number 1.-.-.- Published Annotation - Database Name: EC2GO: GO:0016491
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 1.5.1.9 (metabolism; building block biosynthesis; amino acids; methionine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.1.21 (metabolism; building block biosynthesis; amino acids; homoserine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P00562 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948433 Published Annotation - Entrez Gene Database ID: 948433
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P00562 Published Annotation - Swiss-Prot Accession Number: P00562 Jan 2005
Automated Process Approved db xref EcoGene:EG10590 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0012889 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1790376 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Amino acid biosynthesis: Methionine Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note aspartokinase II and homoserine dehydrogenase II; GO_process: GO:0009086 - methionine biosynthetic process; GO_process: GO:0009090 - homoserine biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76922.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0009067 aspartate family amino acid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011147
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008652 cellular amino acid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001341
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0006520 cellular amino acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001342
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0009086 methionine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009090 homoserine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005106, IPR001342
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0050661 NADP binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005106
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005106
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004412 homoserine dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001342
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004072 aspartate kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001341
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001524 metL CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000624 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001144 metL CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000979 metL CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001226 metL CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001199 metL CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001789 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000513 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004502 metL CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004065 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004315 metL CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000332 metL CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004517 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020416 metL CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000196 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000149 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0296383 metL CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000208 metL CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000133 metL CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001879 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007523 metL CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004194 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007049 metL CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003999 metL CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000233 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010272 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009139 metL CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009422 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081091 metL CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004570 metL CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004675 metL CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006418 metL CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007609 metL CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004515 metL CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008914 metL CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001187 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008730 metL CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007243 metL CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007434 metL CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006894 metL CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010232 metL CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007854 metL CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008047 metL CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007592 metL CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007673 metL CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007260 metL CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007210 metL CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007115 metL CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029101 metL CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007804 metL CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008859 metL CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003650 metL CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003414 metL CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004666 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004631 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004398 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004321 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004377 metL CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134967 metL CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001781 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004534 metL CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003787 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000639 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004282 metL CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002305 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008890 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003013 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000017 metL CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003138 metL CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000848 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003963 metL CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000191 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011588 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000649 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287206 metL CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006896 metL CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064588 metL CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002541 metL CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002258 metL CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000645 metL CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004648 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0147664 metL CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008512 metL CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003727 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004686 metL CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008744 metL CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012850 metL CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010099 metL CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007444 metL CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008791 metL CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007782 metL CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007703 metL CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007401 metL CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007903 metL CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008781 metL CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008686 metL CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003982 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003941 metL CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005103 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008926 metL CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006653 metL CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008382 metL CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006974 metL CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112960 metL CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085241 metL CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004935 metL CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102637 metL CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005053 metL CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007790 metL CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005987 metL CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001080 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267698 metL CDS
Person Approved Go view Shigella boydii 227 ADV-0004316 metL CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009842 metL CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005783 metL CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004267 metL CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074961 metL CDS
Person Approved Go view Shigella flexneri 301 ABT-0090234 metL CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004263 metL CDS
Person Approved Go view Shigella sonnei 046 ADD-0004478 metL CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002783 VC2684 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000354 metL CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003410 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000356 metL CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003207 metL CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003913 metL CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003680 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234494 metL CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007929 metL CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000334 metL CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007735 metL CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003153 metL CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0115691 metL CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007869 metL CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008796 metL CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001476 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005429 metL CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007146 metL CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029896 metL CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005023 metL CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004493 metL CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004556 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008824 metL CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004049 metL CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000113 metL CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000124 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004861 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0005644 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000848 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4124835 to 4137267
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012860priACDScomplement41246124126810Upstream
ABE-0012867rpmECDSforward41270134127225Upstream
ABE-0012869yiiXCDScomplement41272864127894Upstream
ABE-0285658repeat_regionforward41279524128048Upstream
ABE-0012874metJCDScomplement41280784128395Upstream
ABE-0012887metBCDSforward41286724129832Upstream
ABE-0012889metLCDSforward41298354132267Matches
ABE-0285659repeat_regionforward41323474132380Downstream
ABE-0012897metFCDSforward41326164133506Downstream
ABE-0012901katGCDSforward41338354136015Downstream
ABE-0012906yijECDSforward41361084137013Downstream
ABE-0012908yijFCDScomplement41370404137657Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.