Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012897 (metF) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012897 showshow history
Names
metF JW3913 ECK3933 b3941
Product
5,10-methylenetetrahydrofolate reductase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4132616 4133506 891 297
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001525
EnteroFam0012897: Trusted threshold=877.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR003171 (IPR003171 Methylenetetrahydrofolate reductase-like) Apr 2008
Automated Process Approved IPR004620 (IPR004620 5,10-methylenetetrahydrofolate reductase) Apr 2008
Automated Process Approved IPR029041 (IPR029041 FAD-linked oxidoreductase-like) Jul 2018
Automated Process Approved PF02219 (PF02219 Methylenetetrahydrofolate reductase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009257 10-formyltetrahydrofolate biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0006555 methionine metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003171
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003171, IPR004620
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0009086 methionine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004620
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005829 cytosol GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004620
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0004489 methylenetetrahydrofolate reductase (NAD(P)H) activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003171, IPR004620
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name metF Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK3933 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW3913 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3941 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product 5,10-methylenetetrahydrofolate reductase Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0012897: Trusted threshold=877.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001525
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF02219 Methylenetetrahydrofolate reductase Protein Sequence Similarity - PFAM Model Name: PF02219
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR004620 5,10-methylenetetrahydrofolate reductase Protein Sequence Similarity - InterPro Domain: IPR004620
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR029041 FAD-linked oxidoreductase-like Protein Sequence Similarity - InterPro Domain: IPR029041
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR003171 Methylenetetrahydrofolate reductase-like Protein Sequence Similarity - InterPro Domain: IPR003171
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 1.5.1.20 Published Annotation - Swiss-Prot Accession Number: P0AEZ1 Feb 2006
Person Uncurated MultiFun 1.7.17 (metabolism; central intermediary metabolism; formyl-tetrahydrofolate biosynthesis) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10585 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AEZ1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0012897 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948432 Published Annotation - Entrez Gene Database ID: 948432
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1790377 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AEZ1 Published Annotation - Swiss-Prot Accession Number: P0AEZ1 Jan 2006
Person Approved function enzyme; Central intermediary metabolism: Pool, multipurpose conversions Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved protein id AAC76923.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0006555 methionine metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003171
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0009257 10-formyltetrahydrofolate biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009086 methionine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004620
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003171, IPR004620
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005829 cytosol GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004620
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0004489 methylenetetrahydrofolate reductase (NAD(P)H) activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003171, IPR004620
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001525 metF CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000623 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000315 metF CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000514 metF CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001126 metF CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000983 metF CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001784 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000512 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129316 metF CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104773 metF CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104153 metF CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004503 metF CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004064 metF CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004312 metF CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0000327 metF CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004521 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020418 metF CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000197 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000148 metF CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0296390 metF CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000210 metF CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000134 metF CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001881 metF CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007521 metF CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004200 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007047 metF CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004005 metF CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000227 metF CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010271 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009137 metF CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009424 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081097 metF CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004572 metF CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004673 metF CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006420 metF CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007607 metF CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004521 metF CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008915 metF CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001188 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008732 metF CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007245 metF CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007436 metF CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006892 metF CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010234 metF CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007852 metF CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008049 metF CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007594 metF CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007675 metF CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007258 metF CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007208 metF CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007117 metF CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029102 metF CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007812 metF CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008860 metF CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004511 metF CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003651 metF CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003413 metF CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004665 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004632 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004397 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004548 metF CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178665 metF CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004322 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004384 metF CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134968 metF CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001782 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004540 metF CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003788 metF CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000642 metF CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004287 metF CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002304 metF CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008889 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003011 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000015 metF CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003137 metF CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000849 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003962 metF CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000192 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011587 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000648 CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006895 metF CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064581 metF CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002540 metF CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001161 metF CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000644 metF CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004658 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0147662 metF CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0005147 metF CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008517 metF CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003723 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004692 metF CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008752 metF CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012880 metF CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010074 metF CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007439 metF CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008796 metF CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007777 metF CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007708 metF CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007406 metF CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007908 metF CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008786 metF CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008691 metF CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003989 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003948 metF CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005108 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008931 metF CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006648 metF CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008387 metF CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006979 metF CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112947 metF CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085235 metF CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004941 metF CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102654 metF CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005048 metF CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007785 metF CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005992 metF CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001081 metF CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267697 metF CDS
Person Approved Go view Shigella boydii 227 ADV-0004317 metF CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009844 metF CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005782 metF CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004268 metF CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074959 metF CDS
Person Approved Go view Shigella flexneri 301 ABT-0090235 metF CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004264 metF CDS
Person Approved Go view Shigella sonnei 046 ADD-0004479 metF CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002784 VC2685 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000409 metF CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003409 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000363 metF CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003208 metF CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003912 metF CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003679 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234495 metF CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007928 metF CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000335 metF CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007734 metF CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003154 metF CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0115696 metF CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007868 metF CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008795 metF CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001477 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005428 metF CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007147 metF CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029897 metF CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005022 metF CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004492 metF CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004555 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008823 metF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004050 metF CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000114 metF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000125 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004860 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0005639 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000847 metF CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21565mutantTn5 InsertionRequest the StrainABE-0012897metFmetF::Tn5KAN-I-SceI at position 359 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4127616 to 4138506
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012869yiiXCDScomplement41272864127894Upstream
ABE-0285658repeat_regionforward41279524128048Upstream
ABE-0012874metJCDScomplement41280784128395Upstream
ABE-0012887metBCDSforward41286724129832Upstream
ABE-0012889metLCDSforward41298354132267Upstream
ABE-0285659repeat_regionforward41323474132380Upstream
ABE-0012897metFCDSforward41326164133506Matches
ABE-0012901katGCDSforward41338354136015Downstream
ABE-0012906yijECDSforward41361084137013Downstream
ABE-0012908yijFCDScomplement41370404137657Downstream
ABE-0285660repeat_regionforward41377894137886Downstream
ABE-0012912gldACDScomplement41379324139035Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.