Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012901 (katG) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012901 showshow history
Names
katG JW3914 ECK3934 b3942
Product
catalase/hydroperoxidase HPI(I)
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4133835 4136015 2181 727
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR002016 (IPR002016 Haem peroxidase) Apr 2008
Automated Process Approved IPR000763 (IPR000763 Catalase-peroxidase haem) Apr 2008
Automated Process Approved IPR010255 (IPR010255 Haem peroxidase superfamily) Apr 2008
Automated Process Approved PF00141 (PF00141 Peroxidase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006805 xenobiotic metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000763
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002016, IPR000763, IPR010255
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved GO biological process GO:0006979 response to oxidative stress Experimental - PubMed ID: 8257155
Reference: Escherichia coli 		Aug 2005
Automated Process Approved GO biological process GO:0006979 response to oxidative stress GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002016
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0020037 heme binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002016, IPR000763, IPR010255
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0046872 metal ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010255
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004601 peroxidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002016
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004096 catalase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000763
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name katG Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK3934 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW3914 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3942 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product catalase/hydroperoxidase HPI(I) Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name catalase; hydroperoxidase HPI(I) Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Automated Process Approved alternate product name catalase-peroxidase HPI, heme b-containing Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Automated Process Approved protein family IPR000763 Catalase-peroxidase haem Protein Sequence Similarity - InterPro Domain: IPR000763
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00141 Peroxidase Protein Sequence Similarity - PFAM Model Name: PF00141
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR002016 Haem peroxidase Protein Sequence Similarity - InterPro Domain: IPR002016
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR010255 Haem peroxidase superfamily Protein Sequence Similarity - InterPro Domain: IPR010255
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 1.11.1.7 Published Annotation - Database Name: EC2GO: GO:0004601
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 1.11.1.6 Published Annotation - Swiss-Prot Accession Number: P13029 Feb 2006
Person Uncurated MultiFun 5.6.2 (cell processes; protection; detoxification (xenobiotic metabolism)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0012901 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P13029 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10511 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1790378 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P13029 Published Annotation - Swiss-Prot Accession Number: P13029 Jan 2005
Automated Process Approved db xref GeneID:948431 Published Annotation - Entrez Gene Database ID: 948431
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved function enzyme; Detoxification Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved genetic interaction ahpC null mutant plus ahpF null mutant plus katG mutant: ahp katG multiple mutant is highly sensitive to isonicotinic acid hydrazide Experimental - PubMed ID: 8257155
Reference: Escherichia coli 		Aug 2005
Person Approved genetic interaction ahpC null mutant plus ahpF null mutant plus katG mutant: ahp katG multiple mutant is highly sensitive to cumene peroxide Experimental - PubMed ID: 8257155
Reference: Escherichia coli 		Aug 2005
Automated Process Approved note catalase; hydroperoxidase HPI(I); GO_process: GO:0006805 - xenobiotic metabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76924.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0006805 xenobiotic metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000763
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006979 response to oxidative stress GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002016
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002016, IPR000763, IPR010255
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved GO biological process GO:0006979 response to oxidative stress Experimental - PubMed ID: 8257155
Reference: Escherichia coli 		Aug 2005
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004601 peroxidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002016
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0020037 heme binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002016, IPR000763, IPR010255
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0046872 metal ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010255
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004096 catalase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000763
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Homolog
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0268057 katG-2 CDS
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000125 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000140 katG CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001745 katG CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002838 katG CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001178 katG CDS
Ortholog
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003500 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004504 katG CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002063 katG CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004311 katG CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0000326 katG CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007690 CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001385 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000147 katG CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0302610 katG CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002332 katG CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001464 katG CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001882 katG CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007520 katG CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004201 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007046 katG CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004006 katG CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000226 katG CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010270 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009136 katG CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009425 HPI CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081098 katG CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004573 katG CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004672 katG CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006421 katG CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007606 katG CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004522 katG CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008916 katG CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001189 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010235 katG CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029103 katG CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007813 katG CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008861 katG CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004510 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003652 katG CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003412 katG CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004664 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004633 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004396 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004549 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178666 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004323 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004385 katG CDS
Automated Process Approved Go view Escherichia coli Sakai (EHEC) ACA-0134969 katG CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001783 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004541 katG CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001316 katG CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001824 CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002303 katG CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005971 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001816 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001930 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000210 katG CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004032 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000909 katG CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003405 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010611 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001364 CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005686 katG CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062169 katB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000997 katB CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001690 katB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001058 katB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007365 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004606 katG CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008518 katG CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003722 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004693 katG CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008753 katG CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012882 katG CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010068 katG CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007438 katG CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008797 katG CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007776 katG CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007709 katG CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007407 katG CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007909 katG CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008787 katG CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008692 katG CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003990 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003949 katG CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005109 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008932 katG CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006647 katG CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008388 katG CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006980 katG CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112943 katG CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085234 katG CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004942 katG CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102659 katG CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005047 katG CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007784 katG CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005993 katG CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002596 katG CDS
Person Approved Go view Shigella boydii 227 ADV-0004318 katG CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009845 katG CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005781 katG CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074958 katG CDS
Person Approved Go view Shigella flexneri 301 ABT-0090236 katG CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004265 katG CDS
Person Approved Go view Shigella sonnei 046 ADD-0004480 katG CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001632 VC1560 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005022 katG CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003388 katY CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007105 katG CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0004032 katY CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006493 katG CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005985 katG CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003771 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005964 katG CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004319 katG CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007427 katG CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000941 katY CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003638 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004814 katG CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007269 katG CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000996 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004022 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0005634 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000846 katG CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21566mutantTn5 InsertionRequest the StrainABE-0012901katGkatG::Tn5KAN-I-SceI at position 765 in Plus orientation ,- pKD465Blattner Laboratory
FB21567mutantTn5 InsertionRequest the StrainABE-0012901katGkatG::Tn5KAN-I-SceI at position 765 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4128835 to 4141015
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012887metBCDSforward41286724129832Upstream
ABE-0012889metLCDSforward41298354132267Upstream
ABE-0285659repeat_regionforward41323474132380Upstream
ABE-0012897metFCDSforward41326164133506Upstream
ABE-0012901katGCDSforward41338354136015Matches
ABE-0012906yijECDSforward41361084137013Downstream
ABE-0012908yijFCDScomplement41370404137657Downstream
ABE-0285660repeat_regionforward41377894137886Downstream
ABE-0012912gldACDScomplement41379324139035Downstream
ABE-0012915fsaBCDScomplement41390464139708Downstream
ABE-0012920ptsACDScomplement41397204142221Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.