Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012906 (yijE) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012906 showshow history
Names
yijE JW5557 ECK3935 b3943
Product
cystine exporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4136108 4137013 906 302
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000620 (IPR000620 EamA domain) Apr 2008
Automated Process Approved PF00892 (PF00892 EamA-like transporter family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000620
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000620
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name yijE Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK3935 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW5557 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3943 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product cystine exporter Published Annotation - EcoCyc Accession Number: EG11902
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Uncurated alternate product name putative membrane protein Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name predicted permease Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved alternate product name inner membrane protein, predicted permease Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Automated Process Approved protein family PF00892 EamA-like transporter family Protein Sequence Similarity - PFAM Model Name: PF00892
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000620 EamA domain Protein Sequence Similarity - InterPro Domain: IPR000620
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11902 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0012906 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948445 Published Annotation - Entrez Gene Database ID: 948445
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0ABT8 Published Annotation - Swiss-Prot Accession Number: P0ABT8 Jan 2006
Automated Process Approved db xref GI:87082351 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0ABT8 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note GO_component: GO:0009274 - peptidoglycan-based cell wall Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76925.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000620
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000620
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Homolog
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265258 CDS
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0004211 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003593 yijE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003937 yijE CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0008622 yijE CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003417 yijE CDS
Ortholog
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004310 eamA_5 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001883 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007519 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004202 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007045 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004007 yijE CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000225 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010269 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009135 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009426 DUF6 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081099 yijE CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004574 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004671 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006422 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007605 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004523 yijE CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008917 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001190 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008734 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007247 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007438 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006890 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010236 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007850 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008051 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007596 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007677 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007256 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007206 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007119 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029104 yijE CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007814 yijE CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008862 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004509 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003653 yijE CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003411 yijE CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004663 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004634 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004395 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004550 CDS
Person Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0179619 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004324 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004386 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134970 yijE CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001784 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004542 yijE CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001323 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004288 yijE CDS
Person Approved Go view Shigella boydii 227 ADV-0004319 yijE CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009846 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005780 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004270 yijE CDS
Person Approved Go view Shigella flexneri 301 ABT-0090237 CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004266 yijE CDS
Person Approved Go view Shigella sonnei 046 ADD-0004481 yijE CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0005631 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000845 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB23019mutantTn5 InsertionRequest the StrainABE-0012906yijEyijE::Tn5KAN-I-SceI at position 173 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4131108 to 4142013
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012889metLCDSforward41298354132267Upstream
ABE-0285659repeat_regionforward41323474132380Upstream
ABE-0012897metFCDSforward41326164133506Upstream
ABE-0012901katGCDSforward41338354136015Upstream
ABE-0012906yijECDSforward41361084137013Matches
ABE-0012908yijFCDScomplement41370404137657Downstream
ABE-0285660repeat_regionforward41377894137886Downstream
ABE-0012912gldACDScomplement41379324139035Downstream
ABE-0012915fsaBCDScomplement41390464139708Downstream
ABE-0012920ptsACDScomplement41397204142221Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.