Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012950 (ppc) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012950 showshow history
Names
ppc JW3928 ECK3947 glu asp b3956
Product
phosphoenolpyruvate carboxylase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4150447 4153098 2652 884
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001526
EnteroFam0012950: Trusted threshold=2516.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001449 (IPR001449 (DEPRECATED) Phosphoenolpyruvate carboxylase) Apr 2008
Automated Process Approved IPR021135 (IPR021135 Phosphoenolpyruvate carboxylase) Jul 2018
Automated Process Approved IPR015813 (IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily) Jul 2018
Automated Process Approved PF00311 (PF00311 Phosphoenolpyruvate carboxylase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006113 fermentation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006099 tricarboxylic acid cycle GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001449
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0015977 carbon fixation GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR021135
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved GO biological process GO:0006099 tricarboxylic acid cycle Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR015813
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0008964 phosphoenolpyruvate carboxylase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001449
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name ppc Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym glu Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym JW3928 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK3947 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym asp Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b3956 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product phosphoenolpyruvate carboxylase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name phosphoenolpyruvate carboxylase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0012950: Trusted threshold=2516.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001526
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily Protein Sequence Similarity - InterPro Domain: IPR015813
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00311 Phosphoenolpyruvate carboxylase Protein Sequence Similarity - PFAM Model Name: PF00311
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR021135 Phosphoenolpyruvate carboxylase Protein Sequence Similarity - InterPro Domain: IPR021135
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001449 (DEPRECATED) Phosphoenolpyruvate carboxylase Protein Sequence Similarity - InterPro Domain: IPR001449
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 4.1.1.31 Published Annotation - Swiss-Prot Accession Number: P00864 Feb 2006
Person Uncurated MultiFun 1.3.5 (metabolism; energy metabolism, carbon; fermentation) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.4 (metabolism; energy metabolism, carbon; tricarboxylic acid cycle) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10756 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948457 Published Annotation - Entrez Gene Database ID: 948457
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P00864 Published Annotation - Swiss-Prot Accession Number: P00864 Jan 2005
Automated Process Approved db xref ASAP:ABE-0012950 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P00864 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1790393 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Energy metabolism, carbon: Fermentation Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006113 - fermentation; GO_process: GO:0006099 - tricarboxylic acid cycle Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76938.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0015977 carbon fixation GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR021135
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved GO biological process GO:0006099 tricarboxylic acid cycle Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006099 tricarboxylic acid cycle GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001449
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006113 fermentation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0008964 phosphoenolpyruvate carboxylase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001449
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR015813
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001526 ppc CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000857 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000994 ppc CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000910 ppc CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000628 ppc CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000275 ppc CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001469 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002454 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004515 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004062 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004299 ppc CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0000321 ppc CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0009096 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017720 ppc CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0004068 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000143 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0296392 ppc CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000212 ppc CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000138 ppc CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001895 ppc CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007507 ppc CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004214 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007033 ppc CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004019 ppc CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000213 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010254 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009123 ppc CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0010182 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081113 ppc CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004586 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005140 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006434 ppc CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007593 ppc CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004542 ppc CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008929 ppc CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001202 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008746 ppc CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007259 ppc CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007450 ppc CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006878 ppc CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010248 ppc CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007838 ppc CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008063 ppc CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007608 ppc CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007689 ppc CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007243 ppc CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007193 ppc CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007131 ppc CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029118 ppc CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007826 ppc CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008875 ppc CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004496 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003665 ppc CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003399 ppc CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004651 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004646 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004383 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004564 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178683 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004336 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004398 ppc CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134984 ppc CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001797 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004556 ppc CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003789 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000886 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004293 ppc CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002293 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004568 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003010 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000014 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003135 ppc CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000851 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003960 ppc CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0000194 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011586 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000647 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0289951 ppc CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006894 ppc CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060388 ppc CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000113 ppc CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001266 ppc CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003039 ppc CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009364 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0147645 ppc CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001538 ppc CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008524 ppc CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003717 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004705 ppc CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008765 ppc CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012934 ppc CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010024 ppc CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007426 ppc CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008803 ppc CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007769 ppc CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007720 ppc CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007413 ppc CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007915 ppc CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008799 ppc CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008704 ppc CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003995 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003954 ppc CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005125 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008944 ppc CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006635 ppc CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008393 ppc CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006985 ppc CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112925 ppc CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085229 ppc CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004960 ppc CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102695 ppc CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005041 ppc CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007778 ppc CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006005 ppc CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001082 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0263825 ppc CDS
Person Approved Go view Shigella boydii 227 ADV-0004331 ppc CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009858 ppc CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005768 ppc CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004283 ppc CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074941 ppc CDS
Person Approved Go view Shigella flexneri 301 ABT-0090246 ppc CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004278 ppc CDS
Person Approved Go view Shigella sonnei 046 ADD-0004493 ppc CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002745 VC2646 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000356 ppc CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002369 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000366 glu CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003209 ppc CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003911 ppc CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002676 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241753 ppc CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008024 ppc CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000119 ppc CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007731 ppc CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003458 ppc CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128527 ppc CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005940 ppc CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008790 ppc CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006036 ppc CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029902 ppc CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006835 ppc CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000051 ppc CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004252 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007435 ppc CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004052 ppc CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000115 ppc CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000128 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004858 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0005628 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000844 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4145447 to 4158098
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012934pflDCDSforward41439954146292Downstream
ABE-0012937pflCCDSforward41462584147136Downstream
ABE-0012941frwDCDSforward41471384147479Downstream
ABE-0012943yijOCDScomplement41474664148317Downstream
ABE-0285661repeat_regionforward41484304148511Downstream
ABE-0012947eptCCDScomplement41485324150265Downstream
ABE-0012950ppcCDScomplement41504474153098Matches
ABE-0285662repeat_regionforward41533474153692Upstream
ABE-0012955argECDScomplement41536964154847Upstream
ABE-0012964argCCDSforward41550014156005Upstream
ABE-0012967argBCDSforward41560134156789Upstream
ABE-0012969argHCDSforward41568504158223Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.