Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012955 (argE) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012955 showshow history
Names
argE JW3929 ECK3948 argA Arg4 b3957
Product
acetylornithine deacetylase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4153696 4154847 1152 384
Sequence

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001527
EnteroFam0012955: Trusted threshold=1089; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001261 (IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site) Apr 2008
Automated Process Approved IPR002933 (IPR002933 Peptidase M20) Apr 2008
Automated Process Approved IPR011650 (IPR011650 Peptidase M20, dimerisation domain) Apr 2008
Automated Process Approved IPR010169 (IPR010169 Acetylornithine deacetylase ArgE) Apr 2008
Automated Process Approved IPR036264 (IPR036264 Bacterial exopeptidase dimerisation domain) Jul 2018
Automated Process Approved PF01546 (PF01546 Peptidase family M20/M25/M40) Jul 2018
Automated Process Approved PF07687 (PF07687 Peptidase dimerisation domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0006526 arginine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002933
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006526 arginine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010169
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006508 proteolysis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001261
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010169
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0008777 acetylornithine deacetylase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010169
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0050897 cobalt ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010169
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008270 zinc ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010169
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0046983 protein dimerization activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011650
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008237 metallopeptidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001261
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011650
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name argE Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW3929 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym Arg4 Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym argA Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ECK3948 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3957 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product acetylornithine deacetylase Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0012955: Trusted threshold=1089; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001527
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR010169 Acetylornithine deacetylase ArgE Protein Sequence Similarity - InterPro Domain: IPR010169
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036264 Bacterial exopeptidase dimerisation domain Protein Sequence Similarity - InterPro Domain: IPR036264
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site Protein Sequence Similarity - InterPro Domain: IPR001261
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011650 Peptidase M20, dimerisation domain Protein Sequence Similarity - InterPro Domain: IPR011650
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR002933 Peptidase M20 Protein Sequence Similarity - InterPro Domain: IPR002933
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF07687 Peptidase dimerisation domain Protein Sequence Similarity - PFAM Model Name: PF07687
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF01546 Peptidase family M20/M25/M40 Protein Sequence Similarity - PFAM Model Name: PF01546
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Uncurated EC number 3.-.-.- Published Annotation - Database Name: EC2GO: GO:0016787
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 3.5.1.16 Published Annotation - Swiss-Prot Accession Number: P23908 Feb 2006
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.1.3 (metabolism; building block biosynthesis; amino acids; arginine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11286 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1790395 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0012955 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948456 Published Annotation - Entrez Gene Database ID: 948456
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P23908 Published Annotation - Swiss-Prot Accession Number: P23908 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P23908 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Amino acid biosynthesis: Arginine Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006526 - arginine biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76939.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002933
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006526 arginine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010169
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006508 proteolysis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001261
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0006526 arginine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010169
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011650
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008777 acetylornithine deacetylase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010169
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0050897 cobalt ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010169
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0046983 protein dimerization activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011650
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008270 zinc ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010169
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008237 metallopeptidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001261
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001527 argE CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000856 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000537 argE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000790 argE CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000631 argE CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001158 argE CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001467 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002452 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129317 argE CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104154 argE CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004516 argE CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004061 argE CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004298 argE_2 CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0000320 argE_1 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0009088 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017721 argE CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0004067 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000142 argE CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0296396 argE CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000213 argE CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000139 argE CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001896 argE CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007506 argE CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004215 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007032 argE CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004020 argE CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000212 argE CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010253 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009122 argE CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0010181 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081114 argE CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004587 argE CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005142 argE CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006435 argE CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007592 argE CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004543 argE CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008930 argE CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001203 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008747 argE CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007260 argE CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007451 argE CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006877 argE CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010249 argE CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007837 argE CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008064 argE CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007609 argE CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007691 argE CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007242 argE CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007192 argE CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007132 argE CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029119 argE CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007827 argE_2 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008876 argE CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004495 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003666 argE CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003398 argE CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004650 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004647 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004382 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004565 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178684 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004337 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004399 argE CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134985 argE CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001798 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004557 argE CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003790 argE CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000887 argE CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004294 argE CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002292 argE CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004572 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003009 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000013 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003134 argE CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000852 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003959 argE CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0000195 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011585 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000646 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0289952 argE CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006893 arge1 CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060392 argE CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000104 argE CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001268 argE CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003748 argE CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009360 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0147644 argE CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000325 argE-2 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008525 argE CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003715 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004707 argE CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008766 argE CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012939 argE CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010019 argE CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007425 argE CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008804 argE CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007768 argE CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007721 argE CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007414 argE CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007916 argE CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008800 argE CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008705 argE CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003996 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003955 argE CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005126 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008945 argE CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006634 argE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008394 argE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006986 argE CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112921 argE CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085228 argE CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004961 argE CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102698 argE CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005040 argE CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007777 argE CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006006 argE CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001083 argE CDS
Person Approved Go view Shigella boydii 227 ADV-0004332 argE CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009859 argE CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005767 argE CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004284 argE CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074939 argE CDS
Person Approved Go view Shigella flexneri 301 ABT-0090247 argE CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004279 argE CDS
Person Approved Go view Shigella sonnei 046 ADD-0004494 argE CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002744 VC2645 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000415 argE CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002370 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000370 argE CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003210 argE CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003375 argE CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002677 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241754 argE CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008023 argE CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000120 argE CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007730 argE CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003459 argE CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128523 argE CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005941 argE CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008789 argE CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002072 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006035 argE CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007151 argE CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029903 argE CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006836 argE CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000052 argE CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004251 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007434 argE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004053 argE CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000116 argE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000129 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004857 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0005037 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001058 argE CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21574mutantTn5 InsertionRequest the StrainABE-0012955argEargE::Tn5KAN-I-SceI at position 864 in Plus orientation ,- pKD465Blattner Laboratory
FB21575mutantTn5 InsertionRequest the StrainABE-0012955argEargE::Tn5KAN-I-SceI at position 864 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4148696 to 4159847
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012947eptCCDScomplement41485324150265Downstream
ABE-0012950ppcCDScomplement41504474153098Downstream
ABE-0285662repeat_regionforward41533474153692Downstream
ABE-0012955argECDScomplement41536964154847Matches
ABE-0012964argCCDSforward41550014156005Upstream
ABE-0012967argBCDSforward41560134156789Upstream
ABE-0012969argHCDSforward41568504158223Upstream
ABE-0047276oxySncRNAcomplement41582854158394Upstream
ABE-0012973oxyRCDSforward41584904159407Upstream
ABE-0012975sthACDScomplement41593904160790Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.