Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012964 (argC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012964 showshow history
Names
argC JW3930 ECK3949 argH Arg2 b3958
Product
N-acetyl-gamma-glutamylphosphate reductase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4155001 4156005 1005 335
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001528
EnteroFam0012964: Trusted threshold=922.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR006025 (IPR006025 (DEPRECATED) Peptidase M, neutral zinc metallopeptidases, zinc-binding site) Apr 2008
Automated Process Approved IPR000706 (IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1) Apr 2008
Automated Process Approved IPR011137 (IPR011137 (DEPRECATED) N-acetyl-gamma-glutamyl-phosphate reductase, monofunctional) Apr 2008
Automated Process Approved IPR000534 (IPR000534 Semialdehyde dehydrogenase, NAD-binding) Apr 2008
Automated Process Approved IPR012280 (IPR012280 Semialdehyde dehydrogenase, dimerisation domain) Apr 2008
Automated Process Approved IPR036291 (IPR036291 NAD(P)-binding domain superfamily) Jul 2018
Automated Process Approved PF02774 (PF02774 Semialdehyde dehydrogenase, dimerisation domain) Jul 2018
Automated Process Approved PF01118 (PF01118 Semialdehyde dehydrogenase, NAD binding domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008652 cellular amino acid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012280
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000534, IPR000706
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved GO biological process GO:0006526 arginine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006520 cellular amino acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000534
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006526 arginine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000706
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006508 proteolysis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006025
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011137
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0051287 NAD binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000534
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0046983 protein dimerization activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012280
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000534
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003942 N-acetyl-gamma-glutamyl-phosphate reductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000706
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008237 metallopeptidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006025
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008270 zinc ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006025
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name argC Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym argH Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ECK3949 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW3930 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym Arg2 Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b3958 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product N-acetyl-gamma-glutamylphosphate reductase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Feb 2007
Protein Family
Person Approved EnteroFam EnteroFam0012964: Trusted threshold=922.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001528
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR006025 (DEPRECATED) Peptidase M, neutral zinc metallopeptidases, zinc-binding site Protein Sequence Similarity - InterPro Domain: IPR006025
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01118 Semialdehyde dehydrogenase, NAD binding domain Protein Sequence Similarity - PFAM Model Name: PF01118
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036291 NAD(P)-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036291
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 Protein Sequence Similarity - InterPro Domain: IPR000706
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR012280 Semialdehyde dehydrogenase, dimerisation domain Protein Sequence Similarity - InterPro Domain: IPR012280
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011137 (DEPRECATED) N-acetyl-gamma-glutamyl-phosphate reductase, monofunctional Protein Sequence Similarity - InterPro Domain: IPR011137
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000534 Semialdehyde dehydrogenase, NAD-binding Protein Sequence Similarity - InterPro Domain: IPR000534
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF02774 Semialdehyde dehydrogenase, dimerisation domain Protein Sequence Similarity - PFAM Model Name: PF02774
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Uncurated EC number 1.2.1.- Published Annotation - Database Name: EC2GO: GO:0016620
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 1.2.1.38 Published Annotation - Swiss-Prot Accession Number: P11446 Feb 2006
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.1.3 (metabolism; building block biosynthesis; amino acids; arginine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1790396 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10065 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0012964 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P11446 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948455 Published Annotation - Entrez Gene Database ID: 948455
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P11446 Published Annotation - Swiss-Prot Accession Number: P11446 Jan 2005
Person Approved function enzyme; Amino acid biosynthesis: Arginine Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note N-acetyl-gamma-glutamylphosphate reductase; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006526 - arginine biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76940.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0008652 cellular amino acid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012280
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000534, IPR000706
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006520 cellular amino acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000534
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006508 proteolysis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006025
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006526 arginine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000706
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0006526 arginine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011137
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0008237 metallopeptidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006025
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000534
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0051287 NAD binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000534
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0046983 protein dimerization activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012280
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008270 zinc ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006025
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003942 N-acetyl-gamma-glutamyl-phosphate reductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000706
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001528 argC CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000855 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000523 argC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000667 argC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000632 argC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000310 argC CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001466 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002451 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129318 argC CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104155 argC CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004517 argC CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004059 argC CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004297 argC CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000319 argC CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0009087 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017723 argC CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0004066 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000141 argC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001897 argC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007505 argC CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004216 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007031 argC CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004021 argC CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000211 argC CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010252 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009121 argC CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081115 argC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004588 argC CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005143 argC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006436 argC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007591 argC CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004544 argC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008931 argC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001204 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008748 argC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007261 argC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007452 argC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006876 argC CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010250 argC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007836 argC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008065 argC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007610 argC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007692 argC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007241 argC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007191 argC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007133 argC CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029120 argC CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007828 argC CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008877 argC CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004494 argC CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003667 argC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003397 argC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004649 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004648 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004381 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004566 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178685 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004338 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004400 argC CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134986 argC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001799 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004558 argC CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003791 argC CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000888 argC CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004295 argC CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002291 argC CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004573 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003008 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000012 argC CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003133 argC CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000853 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003958 argC CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0000196 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011584 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000645 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0289953 argC CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006892 argC CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060393 argC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000126 argC CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000052 argC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003749 argC CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009359 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0147640 argC CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000608 argC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008526 argC CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003713 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004708 argC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008767 argC CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012944 argC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010015 argC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007424 argC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008805 argC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007767 argC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007722 argC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007415 argC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007917 argC CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008801 argC CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008706 argC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003997 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003956 argC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005127 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008946 argC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006633 argC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008395 argC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006987 argC CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112919 argC CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085227 argC CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004962 argC CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102710 argC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005039 argC CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007776 argC CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006007 argC CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001084 argC CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0263826 argC CDS
Person Approved Go view Shigella boydii 227 ADV-0004333 argC CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009860 argC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005766 argC CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004285 argC CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074938 argC CDS
Person Approved Go view Shigella flexneri 301 ABT-0090248 argC CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004280 argC CDS
Person Approved Go view Shigella sonnei 046 ADD-0004495 argC CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002743 VC2644 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000418 argC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002371 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000374 argC CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003211 argC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003374 argC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002678 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241755 argC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008022 argC CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000121 argC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007729 argC CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003460 argC CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128519 argC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005942 argC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008788 argC CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002631 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006034 argC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007152 argC CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029904 argC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006837 argC CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000053 argC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004250 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007433 argC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004054 argC CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000117 argC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000130 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004856 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0005033 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001059 argC CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21576mutantTn5 InsertionRequest the StrainABE-0012964argCargC::Tn5KAN-I-SceI at position 955 in Minus orientation ,- pKD465Blattner Laboratory
FB21577mutantTn5 InsertionRequest the StrainABE-0012964argCargC::Tn5KAN-I-SceI at position 955 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4150001 to 4161005
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012947eptCCDScomplement41485324150265Upstream
ABE-0012950ppcCDScomplement41504474153098Upstream
ABE-0285662repeat_regionforward41533474153692Upstream
ABE-0012955argECDScomplement41536964154847Upstream
ABE-0012964argCCDSforward41550014156005Matches
ABE-0012967argBCDSforward41560134156789Downstream
ABE-0012969argHCDSforward41568504158223Downstream
ABE-0047276oxySncRNAcomplement41582854158394Downstream
ABE-0012973oxyRCDSforward41584904159407Downstream
ABE-0012975sthACDScomplement41593904160790Downstream
ABE-0285712pseudogeneforward41609834161017Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.