Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012967 (argB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012967 showshow history
Names
argB JW5553 ECK3950 b3959
Product
acetylglutamate kinase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4156013 4156789 777 259
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001529
EnteroFam0012967: Trusted threshold=689.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR011148 (IPR011148 (DEPRECATED) N-acetylglutamate kinase) Apr 2008
Automated Process Approved IPR001048 (IPR001048 Aspartate/glutamate/uridylate kinase) Apr 2008
Automated Process Approved IPR004662 (IPR004662 Acetylglutamate kinase family) Apr 2008
Automated Process Approved IPR036393 (IPR036393 Acetylglutamate kinase-like superfamily) Jul 2018
Automated Process Approved PF00696 (PF00696 Amino acid kinase family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006526 arginine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006526 arginine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004662
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008652 cellular amino acid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011148
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004662
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0003991 acetylglutamate kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011148
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name argB Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW5553 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK3950 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3959 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product acetylglutamate kinase Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0012967: Trusted threshold=689.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001529
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR001048 Aspartate/glutamate/uridylate kinase Protein Sequence Similarity - InterPro Domain: IPR001048
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00696 Amino acid kinase family Protein Sequence Similarity - PFAM Model Name: PF00696
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR004662 Acetylglutamate kinase family Protein Sequence Similarity - InterPro Domain: IPR004662
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011148 (DEPRECATED) N-acetylglutamate kinase Protein Sequence Similarity - InterPro Domain: IPR011148
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036393 Acetylglutamate kinase-like superfamily Protein Sequence Similarity - InterPro Domain: IPR036393
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 2.7.2.8 Published Annotation - Swiss-Prot Accession Number: P0A6C8 Feb 2006
Person Uncurated MultiFun 1.5.1.3 (metabolism; building block biosynthesis; amino acids; arginine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated comment The coordinates of argB have been changed from those reported in the GenBank entry (GBAN:U00096.2) to correspond to the start site predicted in EcoGene (EG10064), adding 1 codon to the N-terminus. Published Annotation in EcoGene - EG Number: EG10064
Reference: Escherichia coli K-12 MG1655 		Apr 2007
Automated Process Approved db xref EcoGene:EG10064 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A6C8 Published Annotation - Swiss-Prot Accession Number: P0A6C8 Jan 2006
Automated Process Approved db xref GeneID:948464 Published Annotation - Entrez Gene Database ID: 948464
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A6C8 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:145693208 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0012967 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Amino acid biosynthesis: Arginine Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006526 - arginine biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76941.3 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0006526 arginine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008652 cellular amino acid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011148
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006526 arginine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004662
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004662
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0003991 acetylglutamate kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011148
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001529 argB CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000854 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000403 argB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000718 argB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000630 argB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000896 argB CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001465 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002450 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129319 argB CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104156 argB CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004518 argB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004058 argB CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004296 argB CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0000318 argB CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0009086 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017724 argB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0004065 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000140 argB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0296401 argB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000214 argB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000140 argB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001898 argB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007504 argB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004217 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007030 argB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004022 argB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000210 argB CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010251 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009120 argB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0010529 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081116 argB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004589 argB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005144 argB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006437 argB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007590 argB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004545 argB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008932 argB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001205 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008749 argB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007262 argB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007453 argB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006875 argB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010251 argB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007835 argB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008066 argB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007611 argB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007693 argB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007240 argB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007190 argB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007134 argB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029121 argB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007829 argB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008878 argB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004493 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003668 argB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003396 argB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004648 argB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004649 argB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004380 argB CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004567 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178686 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004339 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004401 argB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134987 argB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001800 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004559 argB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003792 argB CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000889 argB CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004296 argB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002290 argB CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004574 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003007 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000011 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003132 argB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000854 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003957 argB CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000197 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011583 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000644 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0289954 argB CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006891 argB CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060394 argB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000125 argB CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000053 argB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003750 argB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009358 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0147637 argB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008527 argB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003712 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004709 argB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008768 argB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012948 argB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010013 argB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007423 argB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008806 argB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007766 argB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007723 argB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007416 argB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007918 argB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008802 argB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008707 argB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003998 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003957 argB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005128 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008947 argB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006632 argB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008396 argB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006988 argB CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112917 argB CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085226 argB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004963 argB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102713 argB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005038 argB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007775 argB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006008 argB CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001085 argB CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0263827 argB CDS
Person Approved Go view Shigella boydii 227 ADV-0004334 argB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009861 argB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005765 argB CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004286 argB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074937 argB CDS
Person Approved Go view Shigella flexneri 301 ABT-0090249 argB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004281 argB CDS
Person Approved Go view Shigella sonnei 046 ADD-0004496 argB CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002742 VC2643 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000420 argB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002372 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000379 argB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003212 argB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003373 argB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002679 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241757 argB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008021 argB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000122 argB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007728 argB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003461 argB CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128517 argB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005943 argB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008787 argB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002632 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006033 argB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007153 argB CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029905 argB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006838 argB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000054 argB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004249 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007432 argB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004055 argB CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000118 argB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000132 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004855 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0005029 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001060 argB CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21578mutantTn5 InsertionRequest the StrainABE-0012967argBargB::Tn5KAN-I-SceI at position 435 in Plus orientation ,+ pKD460Blattner Laboratory
FB21579mutantTn5 InsertionRequest the StrainABE-0012967argBargB::Tn5KAN-I-SceI at position 435 in Plus orientation ,- pKD465Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4151013 to 4161789
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012950ppcCDScomplement41504474153098Upstream
ABE-0285662repeat_regionforward41533474153692Upstream
ABE-0012955argECDScomplement41536964154847Upstream
ABE-0012964argCCDSforward41550014156005Upstream
ABE-0012967argBCDSforward41560134156789Matches
ABE-0012969argHCDSforward41568504158223Downstream
ABE-0047276oxySncRNAcomplement41582854158394Downstream
ABE-0012973oxyRCDSforward41584904159407Downstream
ABE-0012975sthACDScomplement41593904160790Downstream
ABE-0285712pseudogeneforward41609834161017Downstream
ABE-0012979fabRCDSforward41611244161771Downstream
ABE-0012981yijDCDSforward41617714162130Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.