Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012969 (argH) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012969 showshow history
Names
argH JW3932 ECK3951 b3960
Product
argininosuccinate lyase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4156850 4158223 1374 458
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000362 (IPR000362 Fumarate lyase family) Apr 2008
Automated Process Approved IPR003031 (IPR003031 (DEPRECATED) Delta crystallin) Apr 2008
Automated Process Approved IPR008948 (IPR008948 L-Aspartase-like) Apr 2008
Automated Process Approved IPR009049 (IPR009049 Argininosuccinate lyase) Apr 2008
Automated Process Approved IPR022761 (IPR022761 Fumarate lyase, N-terminal) Jul 2018
Automated Process Approved IPR029419 (IPR029419 Argininosuccinate lyase, C-terminal) Jul 2018
Automated Process Approved PF00206 (PF00206 Lyase) Jul 2018
Automated Process Approved PF14698 (PF14698 Argininosuccinate lyase C-terminal) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0042450 arginine biosynthetic process via ornithine GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009049
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006526 arginine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0004056 argininosuccinate lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009049
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000362
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name argH Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK3951 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW3932 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3960 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product argininosuccinate lyase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name argininosuccinate lyase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family IPR008948 L-Aspartase-like Protein Sequence Similarity - InterPro Domain: IPR008948
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR003031 (DEPRECATED) Delta crystallin Protein Sequence Similarity - InterPro Domain: IPR003031
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000362 Fumarate lyase family Protein Sequence Similarity - InterPro Domain: IPR000362
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR009049 Argininosuccinate lyase Protein Sequence Similarity - InterPro Domain: IPR009049
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR022761 Fumarate lyase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR022761
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00206 Lyase Protein Sequence Similarity - PFAM Model Name: PF00206
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF14698 Argininosuccinate lyase C-terminal Protein Sequence Similarity - PFAM Model Name: PF14698
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR029419 Argininosuccinate lyase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR029419
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 4.3.2.1 Published Annotation - Swiss-Prot Accession Number: P11447 Feb 2006
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.1.3 (metabolism; building block biosynthesis; amino acids; arginine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P11447 Published Annotation - Swiss-Prot Accession Number: P11447 Jan 2005
Automated Process Approved db xref GeneID:948463 Published Annotation - Entrez Gene Database ID: 948463
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1790398 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P11447 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0012969 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11223 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Amino acid biosynthesis: Arginine Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006526 - arginine biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76942.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0006526 arginine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0042450 arginine biosynthetic process via ornithine GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009049
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000362
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004056 argininosuccinate lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009049
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000853 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000361 argH CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000460 argH CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000629 argH CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000229 argH CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001464 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002449 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129321 argH CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104775 argH CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104158 argH CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004520 argH CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004056 argH CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004295 argH CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000317 argH CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0009085 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0174085 argH CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0004064 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000139 argH CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0296407 argH CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000216 argH CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000142 argH CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001899 argH CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007503 argH CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004218 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007029 argH CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0004023 argH CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000209 argH CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010250 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009119 argH CDS
Person Uncurated Go view Escherichia coli B7A (ETEC) ADK-0010530 argH pseudogene
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081117 argH CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005145 argH CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006438 argH CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007589 argH CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004546 argH CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008933 argH CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001206 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008750 argH CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007263 argH CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007454 argH CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006874 argH CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010252 argH CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007834 argH CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008067 argH CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007612 argH CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007694 argH CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007239 argH CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007189 argH CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007135 argH CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029122 argH CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007830 argH CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008879 argH CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003669 argH CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003395 argH CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004647 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004379 CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004340 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004402 argH CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134988 argH CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001801 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004560 argH CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003794 argH CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000891 argH CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004297 argH CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002289 argH CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004575 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003005 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000009 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003130 argH CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000856 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003955 argH CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000199 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011581 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000642 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0289956 argH CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006889 argH CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060395 argH CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000124 argH CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000054 argH CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003751 argH CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009357 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0147633 argH CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000126 argH CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008528 argH CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003711 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004710 argH CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008769 argH CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012950 argH CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010010 argH CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007422 argH CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008807 argH CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007765 argH CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007724 argH CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007417 argH CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007919 argH CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008803 argH CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008708 argH CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003999 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003958 argH CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005129 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008948 argH CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006631 argH CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008397 argH CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006989 argH CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112914 argH CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0085225 argH CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004964 argH CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0102716 argH CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005037 argH CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007774 argH CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006009 argH CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001087 argH CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0263830 argH CDS
Person Approved Go view Shigella boydii 227 ADV-0004335 argH CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009862 argH CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005764 argH CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004287 argH CDS
Person Uncurated Go view Shigella flexneri 2457T ABQ-0074936 argH CDS
Person Uncurated Go view Shigella flexneri 301 ABT-0090250 argH CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004282 argH CDS
Person Approved Go view Shigella sonnei 046 ADD-0004497 argH CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002740 VC2641 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000422 argH CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002373 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000381 argH CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003213 argH CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003372 argH CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002680 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241758 argH CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008020 argH CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000123 argH CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007727 argH CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003462 argH CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128514 argH CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005944 argH CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008786 argH CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002633 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006032 argH CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007154 argH CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029906 argH CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006839 argH CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000055 argH CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004248 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007431 argH CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004056 argH CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000119 argH CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000133 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004854 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0005024 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001061 argH CDS
Molecular Interactions to toptop
Author Approval Feature Name Technique Evidence Comment Annotated
Person Approved ABE-0012969 argH lambda repressor assay Doodle - bnumber: b3960 Oct 2003
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4151850 to 4163223
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012950ppcCDScomplement41504474153098Upstream
ABE-0285662repeat_regionforward41533474153692Upstream
ABE-0012955argECDScomplement41536964154847Upstream
ABE-0012964argCCDSforward41550014156005Upstream
ABE-0012967argBCDSforward41560134156789Upstream
ABE-0012969argHCDSforward41568504158223Matches
ABE-0047276oxySncRNAcomplement41582854158394Downstream
ABE-0012973oxyRCDSforward41584904159407Downstream
ABE-0012975sthACDScomplement41593904160790Downstream
ABE-0285712pseudogeneforward41609834161017Downstream
ABE-0012979fabRCDSforward41611244161771Downstream
ABE-0012981yijDCDSforward41617714162130Downstream
ABE-0285663repeat_regionforward41621414162162Downstream
ABE-0012983trmACDScomplement41621704163270Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.