Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012987 (btuB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012987 showshow history
Names
btuB JW3938 dcrC ECK3958 cer bfe b3966
Product
vitamin B12/cobalamin outer membrane transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4163639 4165483 1845 615
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001535
EnteroFam0012987: Trusted threshold=1616.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR010916 (IPR010916 TonB box, conserved site) Apr 2008
Automated Process Approved IPR010917 (IPR010917 TonB-dependent receptor, conserved site) Apr 2008
Automated Process Approved IPR012910 (IPR012910 TonB-dependent receptor, plug domain) Apr 2008
Automated Process Approved IPR000531 (IPR000531 TonB-dependent receptor-like, beta-barrel) Apr 2008
Automated Process Approved IPR010101 (IPR010101 TonB-dependent vitamin B12 transporter BtuB) Apr 2008
Automated Process Approved PF07715 (PF07715 TonB-dependent Receptor Plug Domain) Jul 2018
Automated Process Approved PF00593 (PF00593 TonB dependent receptor) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000531
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0015889 cobalamin transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010101
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000531
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0009279 cell outer membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0009279 cell outer membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0015420 ABC-type vitamin B12 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010101
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004872 (DEPRECATED) receptor activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000531
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000531
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name btuB Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym bfe Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym cer Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym JW3938 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym dcrC Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK3958 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3966 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product vitamin B12/cobalamin outer membrane transporter Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name outer membrane receptor for transport of vitamin B12, E colicins, and bacteriophage BF23 Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name outer membrane porin: vitamin B12/cobalamin transport, receptor for E colicins, bacteriophage BF23 Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0012987: Trusted threshold=1616.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001535
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR012910 TonB-dependent receptor, plug domain Protein Sequence Similarity - InterPro Domain: IPR012910
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR010917 TonB-dependent receptor, conserved site Protein Sequence Similarity - InterPro Domain: IPR010917
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR010916 TonB box, conserved site Protein Sequence Similarity - InterPro Domain: IPR010916
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00593 TonB dependent receptor Protein Sequence Similarity - PFAM Model Name: PF00593
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR010101 TonB-dependent vitamin B12 transporter BtuB Protein Sequence Similarity - InterPro Domain: IPR010101
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000531 TonB-dependent receptor-like, beta-barrel Protein Sequence Similarity - InterPro Domain: IPR000531
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF07715 TonB-dependent Receptor Plug Domain Protein Sequence Similarity - PFAM Model Name: PF07715
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Uncurated EC number 3.6.3.33 Published Annotation - Database Name: EC2GO: GO:0015420
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.187 (transport; substrate; vitamin B12) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.1.B (transport; Channel-type Transporters; Beta barrel porins (The Outer Membrane Porin (OMP) Functional Superfamily)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 8.1 (extrachromosomal; prophage genes and phage related functions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.4 (location of gene products; outer membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948468 Published Annotation - Entrez Gene Database ID: 948468
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P06129 Published Annotation - Swiss-Prot Accession Number: P06129 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P06129 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0012987 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1790405 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10126 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function membrane; Outer membrane constituents Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note outer membrane receptor for transport of vitamin B12, E colicins, and bacteriophage BF23; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0009279 - cell outer membrane Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76948.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Outer Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0015889 cobalamin transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010101
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000531
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0009279 cell outer membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0009279 cell outer membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000531
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0015420 ABC-type vitamin B12 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010101
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004872 (DEPRECATED) receptor activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000531
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000531
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001535 btuB CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000617 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001733 btuB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001629 btuB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002407 btuB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001557 btuB CDS
Ortholog
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004050 btuB CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004279 btuB_2 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000309 btuB_1 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004530 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020427 btuB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000204 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000133 btuB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001909 btuB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007495 btuB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004228 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007020 btuB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004033 btuB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000198 btuB CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010241 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009108 btuB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0010148 CDS
Person Uncurated Go view Escherichia coli BL21(DE3) AHL-0005502 pseudogene
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081127 btuB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004601 btuB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005152 btuB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006450 btuB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007578 btuB CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004558 btuB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008941 btuB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001214 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008760 btuB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007273 btuB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007464 btuB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006864 btuB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010262 btuB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007824 btuB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008077 btuB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007622 btuB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007704 btuB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007229 btuB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007179 btuB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007146 btuB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029131 btuB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007842 btuB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008887 btuB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004482 btuB CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003675 btuB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003388 btuB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004640 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004662 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004372 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004578 btuB CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178697 btuB CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004348 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004408 btuB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134997 btuB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001809 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004570 btuB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003801 btuB CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004303 btuB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002283 btuB CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008881 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002997 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000002 btuB CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003124 btuB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000863 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003948 btuB CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0000205 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011575 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000635 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0289963 CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006881 btuB CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064575 btuB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003603 btuB CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003221 btuB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000638 CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004667 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0147614 btuB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008536 btuB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003699 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004716 btuB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008777 btuB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012973 btuB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009986 btuB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007414 btuB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008815 btuB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007757 btuB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007732 btuB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007425 btuB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007927 btuB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008811 btuB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008716 btuB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004006 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003965 btuB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005137 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008956 btuB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006623 btuB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008405 btuB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006997 btuB CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112899 btuB CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085218 btuB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004971 btuB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102739 btuB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005029 btuB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007766 btuB CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001096 btuB CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004252 btuB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074921 btuB CDS
Person Approved Go view Shigella flexneri 301 ABT-0090261 btuB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004294 btuB CDS
Person Approved Go view Shigella sonnei 046 ADD-0004503 btuB CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000162 VC0156 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000438 btuB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002387 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000429 btuB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003227 btuB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003355 btuB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003802 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241782 btuB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004228 btuB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000139 btuB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007713 btuB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003475 CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128469 btuB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005958 btuB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008772 btuB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002646 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006018 btuB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007169 btuB CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029919 btuB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006854 btuB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000071 btuB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004231 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007417 btuB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004070 btuB CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000133 btuB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000149 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004838 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4158639 to 4170483
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012973oxyRCDSforward41584904159407Upstream
ABE-0012975sthACDScomplement41593904160790Upstream
ABE-0285712pseudogeneforward41609834161017Upstream
ABE-0012979fabRCDSforward41611244161771Upstream
ABE-0012981yijDCDSforward41617714162130Upstream
ABE-0285663repeat_regionforward41621414162162Upstream
ABE-0012983trmACDScomplement41621704163270Upstream
ABE-0012987btuBCDSforward41636394165483Matches
ABE-0012989murICDSforward41654284166285Overlaps Downstream
ABE-0012991rrsBrRNAforward41666594168200Downstream
ABE-0012993gltTtRNAforward41683724168447Downstream
ABE-0012995rrlBrRNAforward41686414171544Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.