Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012989 (murI) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012989 showshow history
Names
murI JW5550 yijA ECK3959 mbrC glr dga b3967
Product
glutamate racemase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4165428 4166285 858 286
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001536
EnteroFam0012989: Trusted threshold=645.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001920 (IPR001920 Asp/Glu racemase) Apr 2008
Automated Process Approved IPR004391 (IPR004391 Glutamate racemase) Apr 2008
Automated Process Approved IPR015942 (IPR015942 Asp/Glu/hydantoin racemase) Jul 2018
Automated Process Approved PF01177 (PF01177 Asp/Glu/Hydantoin racemase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0009252 peptidoglycan biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009252 peptidoglycan biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004391
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0006807 nitrogen compound metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR015942
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001920
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0036361 racemase activity, acting on amino acids and derivatives GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR015942
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001920
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008881 glutamate racemase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004391
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name murI Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym dga Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym glr Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym JW5550 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yijA Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK3959 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym mbrC Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b3967 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product glutamate racemase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name glutamate racemase Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name glutamate racemase, required for biosynthesis of D-glutamate and peptidoglycan Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0012989: Trusted threshold=645.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001536
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR015942 Asp/Glu/hydantoin racemase Protein Sequence Similarity - InterPro Domain: IPR015942
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF01177 Asp/Glu/Hydantoin racemase Protein Sequence Similarity - PFAM Model Name: PF01177
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR004391 Glutamate racemase Protein Sequence Similarity - InterPro Domain: IPR004391
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001920 Asp/Glu racemase Protein Sequence Similarity - InterPro Domain: IPR001920
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 5.1.1.- Published Annotation - Database Name: EC2GO: GO:0016855
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 5.1.1.3 Published Annotation - Swiss-Prot Accession Number: P22634 Feb 2006
Person Approved MultiFun 1.6.7 (metabolism; macromolecules (cellular constituent) biosynthesis; peptidoglycan (murein)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.2 (cell structure; peptidoglycan (murein)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11204 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:87082355 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0012989 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P22634 Published Annotation - Swiss-Prot Accession Number: P22634 Jan 2005
Person Uncurated db xref NCBI_gi:290428 Published Annotation - GenPept Accession Number: AAA23677 Apr 2005
Person Uncurated db xref NCBI_gi:42876 Published Annotation - GenPept Accession Number: CAA23637 Apr 2005
Automated Process Approved db xref GeneID:948467 Published Annotation - Entrez Gene Database ID: 948467
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P22634 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated db xref NCBI_gi:42878 Published Annotation - GenPept Accession Number: CAA23638 Apr 2005
Automated Process Approved function 1.6.7 metabolism; macromolecules (cellular constituent) biosynthesis; peptidoglycan (murein) Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Murein sacculus, peptidoglycan Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note glutamate racemase, required for biosynthesis of D-glutamate and peptidoglycan; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_process: GO:0009252 - peptidoglycan biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76949.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 9.16
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0009252 peptidoglycan biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004391
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001920
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0006807 nitrogen compound metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR015942
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved GO biological process GO:0009252 peptidoglycan biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0008881 glutamate racemase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004391
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0036361 racemase activity, acting on amino acids and derivatives GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR015942
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001920
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001536 murI CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000616 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001278 murI CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001014 murI CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000422 murI CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000973 murI CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001777 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000504 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129824 murI CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0105228 murI CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104671 murI CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004527 murI CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004049 murI CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004278 murI CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0000308 murI CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004532 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020428 murI CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000205 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000132 murI CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0296436 murI CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000223 murI CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000149 murI CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001910 murI CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007494 murI CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004229 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007019 murI CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004034 murI CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000197 murI CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010240 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009107 murI CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0010147 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081128 murI CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004602 murI CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005153 murI CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006451 murI CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007577 murI CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004559 murI CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008942 murI CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008761 murI CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007274 murI CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007465 murI CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010263 murI CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007823 murI CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008078 murI CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007623 murI CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007705 murI CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007228 murI CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007147 murI CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029132 murI CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007843 murI CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008888 murI CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004481 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003676 murI CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003387 murI CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004639 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004661 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004371 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004579 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178698 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004349 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004409 murI CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134998 murI CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001810 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004571 murI CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003802 murI CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000900 murI CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004304 murI CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002282 murI CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008880 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002996 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000001 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003123 murI CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000864 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003947 murI CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000206 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011574 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000634 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0289964 murI CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006880 murI CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064574 murI CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002536 murI CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001157 murI CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000637 murI CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004669 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0147612 murI CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001141 murI CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008537 murI CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003698 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004717 murI CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008778 murI CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012979 murI CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009982 murI CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007413 murI CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008816 murI CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007928 murI CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008812 murI CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004007 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003966 murI CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005138 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008957 murI CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008406 murI CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112895 murI CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085217 murI CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004972 murI CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102740 murI CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005028 murI CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001097 murI CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0263746 murI CDS
Person Uncurated Go view Shigella boydii 227 ADV-0004342 murI CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009871 murI CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005752 murI CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004251 murI CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074920 murI CDS
Person Approved Go view Shigella flexneri 301 ABT-0090262 murI CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004295 murI CDS
Person Approved Go view Shigella sonnei 046 ADD-0004504 murI CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000164 VC0158 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000288 murI CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000440 murI CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002388 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000432 dga CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003228 dga CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003354 murI CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003803 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241783 murI CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004229 murI CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000141 murI CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007712 murI CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003476 murI CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128465 murI CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005959 murI CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008771 murI CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006017 murI CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007170 murI CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029920 murI CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006855 murI CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000073 murI CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004230 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007416 murI CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004071 murI CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000134 murI CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000151 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004837 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000719 murI CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4160428 to 4171285
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012975sthACDScomplement41593904160790Upstream
ABE-0285712pseudogeneforward41609834161017Upstream
ABE-0012979fabRCDSforward41611244161771Upstream
ABE-0012981yijDCDSforward41617714162130Upstream
ABE-0285663repeat_regionforward41621414162162Upstream
ABE-0012983trmACDScomplement41621704163270Upstream
ABE-0012987btuBCDSforward41636394165483Overlaps Upstream
ABE-0012989murICDSforward41654284166285Matches
ABE-0012991rrsBrRNAforward41666594168200Downstream
ABE-0012993gltTtRNAforward41683724168447Downstream
ABE-0012995rrlBrRNAforward41686414171544Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.