Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0012999 (murB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0012999 showshow history
Names
murB yijB JW3940 ECK3964 b3972
Product
UDP-N-acetylenolpyruvoylglucosamine reductase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4172057 4173085 1029 343
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001537
EnteroFam0012999: Trusted threshold=827.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR011601 (IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal) Apr 2008
Automated Process Approved IPR003170 (IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase) Apr 2008
Automated Process Approved IPR006094 (IPR006094 FAD linked oxidase, N-terminal) Apr 2008
Automated Process Approved IPR036635 (IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily) Jul 2018
Automated Process Approved IPR036318 (IPR036318 FAD-binding, type PCMH-like superfamily) Jul 2018
Automated Process Approved PF01565 (PF01565 FAD binding domain) Jul 2018
Automated Process Approved PF02873 (PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009252 peptidoglycan biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006094
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006094, IPR011601, IPR003170, IPR036635
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0009252 peptidoglycan biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011601
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0050660 flavin adenine dinucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006094, IPR036318
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0008762 UDP-N-acetylmuramate dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011601
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006094
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name murB Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW3940 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yijB Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK3964 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3972 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product UDP-N-acetylenolpyruvoylglucosamine reductase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Approved alternate product name UDP-N-acetylenolpyruvoylglucosamine reductase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name UDP-N-acetylenolpyruvoylglucosamine reductase, FAD-binding Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0012999: Trusted threshold=827.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001537
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain Protein Sequence Similarity - PFAM Model Name: PF02873
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036318 FAD-binding, type PCMH-like superfamily Protein Sequence Similarity - InterPro Domain: IPR036318
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF01565 FAD binding domain Protein Sequence Similarity - PFAM Model Name: PF01565
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036635
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006094 FAD linked oxidase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR006094
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase Protein Sequence Similarity - InterPro Domain: IPR003170
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR011601
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated EC number 1.3.1.98 Published Annotation - Swiss-Prot Accession Number: P08373
Reference: Escherichia coli K-12 		Mar 2014
Automated Process Uncurated EC number 1.-.-.- Published Annotation - Database Name: EC2GO: GO:0016491
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.6.7 (metabolism; macromolecules (cellular constituent) biosynthesis; peptidoglycan (murein)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.2 (cell structure; peptidoglycan (murein)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948470 Published Annotation - Entrez Gene Database ID: 948470
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref ASAP:ABE-0012999 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11205 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1790407 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P08373 Published Annotation - Swiss-Prot Accession Number: P08373 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P08373 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Murein sacculus, peptidoglycan Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note UDP-N-acetylenolpyruvoylglucosamine reductase; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0009252 - peptidoglycan biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76950.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006094
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009252 peptidoglycan biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009252 peptidoglycan biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011601
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006094, IPR011601, IPR003170, IPR036635
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006094
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0050660 flavin adenine dinucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006094, IPR036318
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0008762 UDP-N-acetylmuramate dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011601
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001537 murB CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000107 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000648 murB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000604 murB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001034 murB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001322 murB CDS
Ortholog
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129315 murB CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104772 murB CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104152 murB CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000249 murB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003972 murB CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004273 murB CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000304 murB CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0009059 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020874 murB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000207 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000059 murB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0296706 murB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000306 murB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000155 murB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001750 murB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009654 murB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004234 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007014 murB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004035 murB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004831 murB CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010235 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0010405 murB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0010358 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081133 murB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004610 murB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005165 murB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010686 murB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010898 murB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004564 murB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008947 murB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003607 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008766 murB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007279 murB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007470 murB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010751 murB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010268 murB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010634 murB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008083 murB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0011056 murB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010844 murB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010814 murB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010602 murB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007152 murB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029137 murB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007848 murB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008893 murB CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003677 murB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003382 murB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004679 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004668 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004488 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004583 murB CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178699 murB CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004355 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004414 murB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135003 murB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001811 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003813 murB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003917 murB CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001010 murB CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004399 murB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002209 murB CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008823 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003318 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004446 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003451 murB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000532 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000217 murB CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0004168 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0007965 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000028 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0290028 murB CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007210 murB CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060419 murB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000136 murB CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000067 murB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003487 murB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004674 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0147605 murB CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0003906 murB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008543 murB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003691 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004728 murB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008785 murB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012988 murB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010542 murB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007407 murB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008822 murB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007934 murB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008817 murB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004013 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003972 murB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005147 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008962 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008412 murB CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112888 murB CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085211 murB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004979 murB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102748 murB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005021 murB CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000691 murB CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0263757 murB CDS
Person Approved Go view Shigella boydii 227 ADV-0004348 murB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009877 murB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0008488 murB CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004246 murB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074915 murB CDS
Person Approved Go view Shigella flexneri 301 ABT-0090264 murB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004300 murB CDS
Person Approved Go view Shigella sonnei 046 ADD-0004509 murB CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000339 VC0318 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000036 murB CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000447 murB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003634 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000864 murB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0004193 murB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003957 murB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003799 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242195 murB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007519 murB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004088 murB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008817 murB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003614 murB CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127902 murB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008690 murB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006573 murB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001576 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009434 murB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008115 murB CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030084 murB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0009091 murB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000266 murB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004046 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004421 murB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007905 murB CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000295 murB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000346 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000382 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0003798 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000646 murB CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4167057 to 4178085
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012991rrsBrRNAforward41666594168200Upstream
ABE-0012993gltTtRNAforward41683724168447Upstream
ABE-0012995rrlBrRNAforward41686414171544Upstream
ABE-0012997rrfBrRNAforward41716374171756Upstream
ABE-0012999murBCDSforward41720574173085Matches
ABE-0013001birACDSforward41730824174047Overlaps Downstream
ABE-0013003coaACDScomplement41740764175026Downstream
ABE-0013011thrUtRNAforward41753884175463Downstream
ABE-0013013tyrUtRNAforward41754724175556Downstream
ABE-0013016glyTtRNAforward41756734175747Downstream
ABE-0013018thrTtRNAforward41757544175829Downstream
ABE-0013020tufBCDSforward41759444177128Downstream
ABE-0013023secECDSforward41773584177741Downstream
ABE-0013026nusGCDSforward41777434178288Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.