Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0013003 (coaA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0013003 showshow history
Names
coaA JW3942 ts-9 ECK3966 rts panK b3974
Product
pantothenate kinase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4174076 4175026 951 317
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001539
EnteroFam0013003: Trusted threshold=889.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR004566 (IPR004566 Pantothenate kinase) Apr 2008
Automated Process Approved IPR006083 (IPR006083 Phosphoribulokinase/uridine kinase) Apr 2008
Automated Process Approved IPR027417 (IPR027417 P-loop containing nucleoside triphosphate hydrolase) Jul 2018
Automated Process Approved PF00485 (PF00485 Phosphoribulokinase / Uridine kinase family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0015937 coenzyme A biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006083
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006083
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0015937 coenzyme A biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004566
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004566
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016301 kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006083
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004594 pantothenate kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004566
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004566
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name coaA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK3966 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW3942 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym ts-9 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym rts Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym panK Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b3974 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product pantothenate kinase Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0013003: Trusted threshold=889.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001539
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR027417 P-loop containing nucleoside triphosphate hydrolase Protein Sequence Similarity - InterPro Domain: IPR027417
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006083 Phosphoribulokinase/uridine kinase Protein Sequence Similarity - InterPro Domain: IPR006083
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004566 Pantothenate kinase Protein Sequence Similarity - InterPro Domain: IPR004566
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00485 Phosphoribulokinase / Uridine kinase family Protein Sequence Similarity - PFAM Model Name: PF00485
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 2.7.1.33 Published Annotation - Swiss-Prot Accession Number: P0A6I3 Feb 2006
Person Uncurated MultiFun 1.5.3.5 (metabolism; building block biosynthesis; cofactor, small molecule carrier; Coenzyme A) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10922 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1790409 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0013003 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948479 Published Annotation - Entrez Gene Database ID: 948479
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0A6I3 Published Annotation - Swiss-Prot Accession Number: P0A6I3 Jan 2006
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A6I3 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Biosynthesis of cofactors, carriers: Pantothenate Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Uncurated genetic interaction coaA mutant and ybjN overexpression; overexpression of ybjN (ASAP:ABE-0002910) suppresses a temperature sensitive coaA mutant Experimental - PubMed ID: 16701556
Reference: Escherichia coli K-12 		Feb 2007
Automated Process Approved note GO_process: GO:0015937 - coenzyme A biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76952.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Approved GO biological process GO:0015937 coenzyme A biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006083
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006083
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0015937 coenzyme A biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004566
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004566
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004594 pantothenate kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004566
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016301 kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006083
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004566
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001539 coaA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000220 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001653 coaA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001267 coaA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001036 coaA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001334 coaA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000190 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002980 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000251 coaA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003970 coaA CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004271 coaA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000302 coaA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0009057 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020876 coaA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000209 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000499 coaA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0296714 coaA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000308 coaA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000157 coaA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001752 coaA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004236 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007012 coaA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004037 coaA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004833 coaA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010233 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0010608 coaA CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081135 coaA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004612 coaA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005167 coaA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010688 coaA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004566 coaA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008949 coaA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0006517 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008768 coaA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007281 coaA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007472 coaA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010270 coaA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010632 coaA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008085 coaA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010846 coaA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010812 coaA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007154 coaA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029139 coaA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007850 coaA_2 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008895 coaA CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003679 coaA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003380 coaA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004677 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004666 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004490 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004585 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004357 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004416 coaA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135005 coaA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001813 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003811 coaA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001012 coaA CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004401 coaA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002614 coaA CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008821 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003320 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004448 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003453 coaA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000530 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000219 coaA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0004166 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0007967 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000026 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0290026 coaA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007212 coaA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060421 coaA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000137 coaA CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001271 coaA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003489 coaA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004676 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0147603 coaA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008545 coaA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003688 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004730 coaA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008787 coaA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012995 coaA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010535 coaA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007405 coaA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008824 coaA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008856 coaA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007936 coaA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008819 coaA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0009321 coaA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004015 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003974 coaA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005149 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008964 coaA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0009356 coaA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008414 coaA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112882 coaA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085209 coaA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004981 coaA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102753 coaA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005019 coaA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009428 coaA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0009362 coaA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000689 coaA CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0263759 panK CDS
Person Approved Go view Shigella boydii 227 ADV-0004350 coaA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009879 coaA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0008486 coaA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004244 coaA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074913 coaA CDS
Person Approved Go view Shigella flexneri 301 ABT-0090266 coaA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004302 coaA CDS
Person Approved Go view Shigella sonnei 046 ADD-0004511 coaA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000341 VC0320 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000038 coaA CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000451 coaA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003632 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000872 coaA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0004195 coaA_1 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003959 coaA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003797 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242197 coaA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007517 coaA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004086 coaA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008815 coaA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003616 coaA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127895 coaA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008692 coaA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006575 coaA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001574 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009436 coaA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008117 coaA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030087 coaA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0009093 coaA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000268 coaA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004044 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004423 coaA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007903 coaA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000297 coaA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000348 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000384 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0003787 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000644 coaA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4169076 to 4180026
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012995rrlBrRNAforward41686414171544Downstream
ABE-0012997rrfBrRNAforward41716374171756Downstream
ABE-0012999murBCDSforward41720574173085Downstream
ABE-0013001birACDSforward41730824174047Downstream
ABE-0013003coaACDScomplement41740764175026Matches
ABE-0013011thrUtRNAforward41753884175463Upstream
ABE-0013013tyrUtRNAforward41754724175556Upstream
ABE-0013016glyTtRNAforward41756734175747Upstream
ABE-0013018thrTtRNAforward41757544175829Upstream
ABE-0013020tufBCDSforward41759444177128Upstream
ABE-0013023secECDSforward41773584177741Upstream
ABE-0013026nusGCDSforward41777434178288Upstream
ABE-0013029rplKCDSforward41784474178875Upstream
ABE-0013031rplACDSforward41788794179583Upstream
ABE-0013035rplJCDSforward41799964180493Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.