Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0013048 (thiH) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0013048 showshow history
Names
thiH thiB JW3953 ECK3981 thiA b3990
Product
thiamin biosynthesis ThiGH complex subunit
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4190735 4191868 1134 378
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001548
EnteroFam0013048: Trusted threshold=1053.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR007197 (IPR007197 Radical SAM) Apr 2008
Automated Process Approved IPR010722 (IPR010722 Biotin and thiamin synthesis-associated domain) Apr 2008
Automated Process Approved IPR013785 (IPR013785 Aldolase-type TIM barrel) Apr 2008
Automated Process Approved IPR012726 (IPR012726 Thiazole biosynthesis ThiH) Apr 2008
Automated Process Approved PF06968 (PF06968 Biotin and Thiamin Synthesis associated domain) Jul 2018
Automated Process Approved PF04055 (PF04055 Radical SAM superfamily) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0009228 thiamine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009228 thiamine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012726
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009102 biotin biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010722
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0051539 4 iron, 4 sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012726
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005506 iron ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012726
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007197
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0051536 iron-sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007197
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004076 biotin synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010722
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name thiH Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW3953 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym thiB Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK3981 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym thiA Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b3990 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product thiamin biosynthesis ThiGH complex subunit Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name thiamine biosynthesis enzyme subunit, with ThiG Published Annotation - Database Name: GenProtEC Jan 2006
Person Uncurated alternate product name thiamin (thiazole moiety) biosynthesis protein Published Annotation - Swiss-Prot Accession Number: P30140 Jan 2006
Automated Process Approved alternate product name tyrosine lyase, involved in thiamin-thiazole moiety synthesis Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Person Approved EnteroFam EnteroFam0013048: Trusted threshold=1053.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001548
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF06968 Biotin and Thiamin Synthesis associated domain Protein Sequence Similarity - PFAM Model Name: PF06968
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR012726 Thiazole biosynthesis ThiH Protein Sequence Similarity - InterPro Domain: IPR012726
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR007197 Radical SAM Protein Sequence Similarity - InterPro Domain: IPR007197
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR010722 Biotin and thiamin synthesis-associated domain Protein Sequence Similarity - InterPro Domain: IPR010722
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF04055 Radical SAM superfamily Protein Sequence Similarity - PFAM Model Name: PF04055
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR013785 Aldolase-type TIM barrel Protein Sequence Similarity - InterPro Domain: IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated EC number 2.8.1.6 Protein Sequence Similarity - InterPro Domain: IPR010722
Reference: Escherichia coli K-12 MG1655 		Dec 2008
Person Uncurated MultiFun 1.5.3.8 (metabolism; building block biosynthesis; cofactor, small molecule carrier; thiamin) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11590 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948494 Published Annotation - Entrez Gene Database ID: 948494
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1790423 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P30140 Published Annotation - Swiss-Prot Accession Number: P30140 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P30140 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0013048 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Biosynthesis of cofactors, carriers: Thiamin Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_process: GO:0009228 - thiamin biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76964.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Approved GO biological process GO:0009228 thiamine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009228 thiamine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012726
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009102 biotin biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010722
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007197
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0051536 iron-sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007197
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0051539 4 iron, 4 sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012726
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005506 iron ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012726
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004076 biotin synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010722
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001548 thiH CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000229 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001879 thiH CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001932 thiH CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001244 thiH CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001994 thiH CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000479 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002995 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000263 thiH CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003956 thiH CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004253 thiH CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0000283 thiH CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0009031 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0014916 thiH CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000234 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000513 thiH CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001777 thiH CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009139 thiH CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004250 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006994 thiH CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004046 thiH CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004844 thiH CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010219 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009785 thiH CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009095 ThiH CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081152 thiH CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004629 thiH CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006064 thiH CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010404 thiH CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004581 thiH CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008967 thiH CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0006529 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008786 thiH CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007299 thiH CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006946 thiH CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010159 thiH CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010288 thiH CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009954 thiH CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008104 thiH CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010527 thiH CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010863 thiH CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010111 thiH CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006130 thiH CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010609 thiH CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029155 thiH CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009579 thiH CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008911 thiH CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003882 thiH CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003690 thiH CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003365 thiH CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004704 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004692 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004517 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004600 thiH CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178715 thiH CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004373 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004431 thiH CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135021 thiH CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001826 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003839 thiH CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003928 thiH CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001024 thiH CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004420 thiH CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002626 thiH CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008795 CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060438 thiH CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000153 thiH CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001273 thiH CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001366 thiH CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004695 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0137870 thiH CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008565 thiH CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003662 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004752 thiH CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008805 thiH CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013048 thiH CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010484 thiH CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008896 thiH CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008844 thiH CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008682 thiH CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008491 thiH CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008656 thiH CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007956 thiH CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008838 thiH CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0009111 thiH CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004033 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003992 thiH CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005172 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004189 thiH CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008851 thiH CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008433 thiH CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008723 thiH CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112849 thiH CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085194 thiH CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0005006 thiH CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102797 thiH CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005000 thiH CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009253 thiH CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0009000 thiH CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000674 thiH CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266027 thiH CDS
Person Approved Go view Shigella boydii 227 ADV-0004366 thiH CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009899 thiH CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007647 thiH CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004226 thiH CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074897 thiH CDS
Person Approved Go view Shigella flexneri 301 ABT-0090280 thiH CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004316 thiH CDS
Person Approved Go view Shigella sonnei 046 ADD-0004526 thiH CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000073 VC0066 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000025 thiH CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000975 thiH CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002769 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000921 thiH CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003933 thiH CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002405 thiH CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003087 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241726 thiH CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004315 thiH CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008538 thiH CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003631 thiH CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127844 thiH CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008562 thiH CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008717 thiH CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002616 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007562 thiH CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008137 thiH CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030107 thiH CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0009019 thiH CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000287 thiH CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008739 thiH CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007886 thiH CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000312 thiH CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000364 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000401 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0000091 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000629 thiH CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4185735 to 4196868
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0013043rpoCCDSforward41853504189573Downstream
ABE-0013046yjaZCDSforward41897864190325Downstream
ABE-0285231sroHncRNAcomplement41903274190487Downstream
ABE-0013048thiHCDScomplement41907354191868Matches
ABE-0013050thiGCDScomplement41918654192635Overlaps Upstream
ABE-0023907thiSCDScomplement41926374192837Upstream
ABE-0013053thiFCDScomplement41928214193576Upstream
ABE-0013055thiECDScomplement41935694194204Upstream
ABE-0013057thiCCDScomplement41942044196099Upstream
ABE-0013059rsdCDScomplement41963324196808Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.