Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0013055 (thiE) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0013055 showshow history
Names
thiE JW3957 ECK3985 thiA b3993
Product
thiamin phosphate synthase (thiamin phosphate pyrophosphorylase)
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4193569 4194204 636 212
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001551
EnteroFam0013055: Trusted threshold=513; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR012264 (IPR012264 (DEPRECATED) Thiamine-phosphate pyrophosphorylase) Apr 2008
Automated Process Approved IPR003733 (IPR003733 (DEPRECATED) Thiamine phosphate synthase) Apr 2008
Automated Process Approved IPR013785 (IPR013785 Aldolase-type TIM barrel) Apr 2008
Automated Process Approved IPR022998 (IPR022998 Thiamine phosphate synthase/TenI) Jul 2018
Automated Process Approved IPR034291 (IPR034291 Thiamine phosphate synthase) Jul 2018
Automated Process Approved IPR036206 (IPR036206 Thiamin phosphate synthase superfamily) Jul 2018
Automated Process Approved PF02581 (PF02581 Thiamine monophosphate synthase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0009228 thiamine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009228 thiamine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012264
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000287 magnesium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012264
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004789 thiamine-phosphate diphosphorylase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012264
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name thiE Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym thiA Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ECK3985 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW3957 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3993 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product thiamin phosphate synthase (thiamin phosphate pyrophosphorylase) Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name thiamin-phosphate synthase (thiamine-phosphate pyrophosphorylase) Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name thiamin phosphate synthase (thiamine phosphate pyrophosphorylase) Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0013055: Trusted threshold=513; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001551
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR012264 (DEPRECATED) Thiamine-phosphate pyrophosphorylase Protein Sequence Similarity - InterPro Domain: IPR012264
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013785 Aldolase-type TIM barrel Protein Sequence Similarity - InterPro Domain: IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR022998 Thiamine phosphate synthase/TenI Protein Sequence Similarity - InterPro Domain: IPR022998
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR034291 Thiamine phosphate synthase Protein Sequence Similarity - InterPro Domain: IPR034291
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036206 Thiamin phosphate synthase superfamily Protein Sequence Similarity - InterPro Domain: IPR036206
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF02581 Thiamine monophosphate synthase Protein Sequence Similarity - PFAM Model Name: PF02581
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR003733 (DEPRECATED) Thiamine phosphate synthase Protein Sequence Similarity - InterPro Domain: IPR003733
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 2.5.1.3 Published Annotation - Swiss-Prot Accession Number: P30137 Feb 2006
Person Uncurated MultiFun 1.5.3.8 (metabolism; building block biosynthesis; cofactor, small molecule carrier; thiamin) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P30137 Published Annotation - Swiss-Prot Accession Number: P30137 Jan 2005
Automated Process Approved db xref GeneID:948491 Published Annotation - Entrez Gene Database ID: 948491
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1790426 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P30137 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0013055 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11586 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Biosynthesis of cofactors, carriers: Thiamin Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note thiamin-phosphate synthase (thiamine-phosphate pyrophosphorylase); GO_process: GO:0009228 - thiamin biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76967.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0009228 thiamine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012264
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0009228 thiamine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004789 thiamine-phosphate diphosphorylase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012264
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000287 magnesium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012264
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001551 thiE CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000232 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000586 thiE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000934 thiE CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001382 thiE CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000731 thiE CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000475 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002999 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000267 thiE CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003952 thiE CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004249 thiE CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000279 thiE CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0009027 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0014921 thiE CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000238 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000517 thiE CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0296795 thiE CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000330 thiE CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000184 thiE CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001773 thiE CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009143 thiE CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004254 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006990 thiE CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004050 thiE CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004848 thiE CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010215 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009789 thiE CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009091 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081156 thiE CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004633 thiE CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005188 thiE CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006068 thiE CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010408 thiE CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004585 thiE CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008971 thiE CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0006533 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008790 thiE CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007303 thiE CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006950 thiE CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010155 thiE CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010292 thiE CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009950 thiE CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008108 thiE CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010523 thiE CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010867 thiE CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010115 thiE CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006126 thiE CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010613 thiE CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029159 thiE CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009583 thiE CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008915 thiE CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003887 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003693 thiE CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003361 thiE CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004700 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004688 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004513 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004604 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178719 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004377 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004435 thiE CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135024 thiE CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001830 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003835 thiE CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003932 thiE CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001028 thiE CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004424 thiE CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002630 thiE CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008791 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003333 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004461 CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000518 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000234 thiE CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0004150 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0007980 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000015 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0290963 thiE CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007230 thiE CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060442 thiE CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000155 thiE CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001276 thiE CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001370 thiE CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004699 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0137878 thiE CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008569 thiE CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003658 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004755 thiE CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008809 thiE CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013059 thiE CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010474 thiE CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008892 thiE CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008848 thiE CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008686 thiE CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008487 thiE CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008652 thiE CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007960 thiE CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008842 thiE CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0009107 thiE CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004037 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003996 thiE CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005176 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004193 thiE CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008847 thiE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008437 thiE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008727 thiE CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112844 thiE CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085190 thiE CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0005010 thiE CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102808 thiE CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004996 thiE CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009249 thiE CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0009004 thiE CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000670 thiE CDS
Person Approved Go view Shigella boydii 227 ADV-0004370 thiE CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009903 thiE CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007651 thiE CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004222 thiE CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074894 thiE CDS
Person Approved Go view Shigella flexneri 301 ABT-0090283 thiE CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004320 thiE CDS
Person Approved Go view Shigella sonnei 046 ADD-0004530 thiE CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000030 thiE CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000980 thiE CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002765 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000926 thiE CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003929 thiE CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002409 thiE CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003083 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241721 thiE CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004559 thiE CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004311 thiE CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008534 thiE CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003634 thiE CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127839 thiE CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008566 thiE CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008720 thiE CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002619 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007565 thiE CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008141 thiE CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030110 thiE CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0009022 thiE CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000291 thiE CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004488 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008735 thiE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007883 thiE CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000316 thiE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000368 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000405 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0000109 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000625 thiE CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21588mutantTn5 InsertionRequest the StrainABE-0013055thiEthiE::Tn5KAN-I-SceI at position 307 in Minus orientation ,+ pKD460Blattner Laboratory
FB21589mutantTn5 InsertionRequest the StrainABE-0013055thiEthiE::Tn5KAN-I-SceI at position 307 in Minus orientation ,- pKD465Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4188569 to 4199204
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0013043rpoCCDSforward41853504189573Downstream
ABE-0013046yjaZCDSforward41897864190325Downstream
ABE-0285231sroHncRNAcomplement41903274190487Downstream
ABE-0013048thiHCDScomplement41907354191868Downstream
ABE-0013050thiGCDScomplement41918654192635Downstream
ABE-0023907thiSCDScomplement41926374192837Downstream
ABE-0013053thiFCDScomplement41928214193576Overlaps Downstream
ABE-0013055thiECDScomplement41935694194204Matches
ABE-0013057thiCCDScomplement41942044196099Overlaps Upstream
ABE-0013059rsdCDScomplement41963324196808Upstream
ABE-0013063nudCCDSforward41969034197676Upstream
ABE-0013066hemECDSforward41977164198780Upstream
ABE-0013068nfiCDSforward41987904199461Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.