Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0013057 (thiC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0013057 showshow history
Names
thiC JW3958 ECK3986 b3994
Product
thiamin (pyrimidine moiety) biosynthesis protein
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4194204 4196099 1896 632
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001552
EnteroFam0013057: Trusted threshold=1849.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR002817 (IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B) Apr 2008
Automated Process Approved IPR025747 (IPR025747 ThiC-associated domain) Jul 2018
Automated Process Approved PF01964 (PF01964 Radical SAM ThiC family) Jul 2018
Automated Process Approved PF13667 (PF13667 ThiC-associated domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0009228 thiamine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009228 thiamine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002817
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0051536 iron-sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002817
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name thiC Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK3986 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW3958 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3994 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product thiamin (pyrimidine moiety) biosynthesis protein Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name 5'-phosphoryl-5-aminoimidazole = 4-amino-5-hydroxymethyl-2-methylpyrimidine-P Published Annotation - Database Name: GenProtEC Jan 2006
Automated Process Approved alternate product name phosphomethylpyrimidine synthase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated alternate product name thiamin (pyrimidine moiety) biosynthesis protein Published Annotation - Swiss-Prot Accession Number: P30136 Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0013057: Trusted threshold=1849.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001552
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF01964 Radical SAM ThiC family Protein Sequence Similarity - PFAM Model Name: PF01964
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF13667 ThiC-associated domain Protein Sequence Similarity - PFAM Model Name: PF13667
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B Protein Sequence Similarity - InterPro Domain: IPR002817
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR025747 ThiC-associated domain Protein Sequence Similarity - InterPro Domain: IPR025747
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Approved EC number 4.1.99.17 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated MultiFun 1.5.3.8 (metabolism; building block biosynthesis; cofactor, small molecule carrier; thiamin) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948492 Published Annotation - Entrez Gene Database ID: 948492
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P30136 Published Annotation - Swiss-Prot Accession Number: P30136 Jan 2005
Automated Process Approved db xref GI:1790427 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P30136 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0013057 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11585 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Biosynthesis of cofactors, carriers: Thiamin Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_process: GO:0009228 - thiamin biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76968.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0009228 thiamine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002817
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0009228 thiamine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0051536 iron-sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002817
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001552 thiC CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000233 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000736 thiC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000713 thiC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000912 thiC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000946 thiC CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000474 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003000 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000268 thiC CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004248 thiC CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000278 thiC CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0009026 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0014922 thiC CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000239 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000518 thiC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0296797 thiC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000331 thiC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000185 thiC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001772 thiC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009144 thiC CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004255 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006989 thiC CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004051 thiC CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004849 thiC CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010214 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009790 thiC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009090 ThiC CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081157 thiC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004634 thiC CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005189 thiC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006069 thiC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010409 thiC CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004586 thiC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008972 thiC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0006534 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008791 thiC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007304 thiC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006951 thiC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010154 thiC CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010293 thiC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009949 thiC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008109 thiC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010522 thiC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010868 thiC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010116 thiC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006125 thiC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010614 thiC CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029160 thiC CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009584 thiC CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008916 thiC CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003888 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003694 thiC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003360 thiC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004699 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004687 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004512 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004605 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178720 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004378 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004436 thiC CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135025 thiC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001831 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003834 thiC CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003933 thiC CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001029 thiC CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004425 thiC CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002631 thiC CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008790 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003334 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004462 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003469 thiC CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000517 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000235 thiC CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0004149 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0007981 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000014 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0290962 thiC CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007231 thiC CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060443 thiC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0004197 thiC CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003451 thiC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001371 thiC CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004700 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0137880 thiC CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0005054 thiC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008570 thiC CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003657 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004756 thiC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008810 thiC CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013061 thiC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010472 thiC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008891 thiC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008849 thiC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008687 thiC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008486 thiC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008651 thiC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007961 thiC CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008843 thiC CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0009106 thiC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004038 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003997 thiC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005177 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004194 thiC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008846 thiC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008438 thiC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008728 thiC CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112842 thiC CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085189 thiC CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0005011 thiC CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102811 thiC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004995 thiC CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009248 thiC CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0009005 thiC CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000669 thiC CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266032 thiC CDS
Person Approved Go view Shigella boydii 227 ADV-0004371 thiC CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009904 thiC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007652 thiC CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004221 thiC CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074893 thiC CDS
Person Approved Go view Shigella flexneri 301 ABT-0090284 thiC CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004321 thiC CDS
Person Approved Go view Shigella sonnei 046 ADD-0004531 thiC CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000068 VC0061 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000031 thiC CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000981 thiC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002764 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000929 thiC CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003928 thiC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002410 thiC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003082 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241720 thiC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004560 thiC CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004310 thiC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008533 thiC CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003635 thiC CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127837 thiC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008567 thiC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008721 thiC CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002620 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007566 thiC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008142 thiC CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030111 thiC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0009023 thiC CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000292 thiC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004487 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008734 thiC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007882 thiC CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000317 thiC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000369 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000406 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0000114 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000624 thiC CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21590mutantTn5 InsertionRequest the StrainABE-0013057thiCthiC::Tn5KAN-I-SceI at position 1390 in Plus orientation ,+ pKD460Blattner Laboratory
FB21591mutantTn5 InsertionRequest the StrainABE-0013057thiCthiC::Tn5KAN-I-SceI at position 1390 in Plus orientation ,- pKD465Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4189204 to 4201099
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0013043rpoCCDSforward41853504189573Downstream
ABE-0013046yjaZCDSforward41897864190325Downstream
ABE-0285231sroHncRNAcomplement41903274190487Downstream
ABE-0013048thiHCDScomplement41907354191868Downstream
ABE-0013050thiGCDScomplement41918654192635Downstream
ABE-0023907thiSCDScomplement41926374192837Downstream
ABE-0013053thiFCDScomplement41928214193576Downstream
ABE-0013055thiECDScomplement41935694194204Overlaps Downstream
ABE-0013057thiCCDScomplement41942044196099Matches
ABE-0013059rsdCDScomplement41963324196808Upstream
ABE-0013063nudCCDSforward41969034197676Upstream
ABE-0013066hemECDSforward41977164198780Upstream
ABE-0013068nfiCDSforward41987904199461Upstream
ABE-0013070yjaGCDSforward41995044200094Upstream
ABE-0013077hupACDSforward42002814200553Upstream
ABE-0013079yjaHCDSforward42005664201261Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.