Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0013097 (purH) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0013097 showshow history
Names
purH JW3970 ECK3998 b4006
Product
phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4205943 4207532 1590 530
Sequence

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001561
EnteroFam0013097: Trusted threshold=1551.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR011607 (IPR011607 Methylglyoxal synthase-like domain) Apr 2008
Automated Process Approved IPR013982 (IPR013982 (DEPRECATED) AICARFT/IMPCHase bienzyme, transformylase domain) Apr 2008
Automated Process Approved IPR002695 (IPR002695 Bifunctional purine biosynthesis protein PurH-like) Apr 2008
Automated Process Approved IPR016193 (IPR016193 Cytidine deaminase-like) Jul 2018
Automated Process Approved IPR036914 (IPR036914 Methylglyoxal synthase-like domain superfamily) Jul 2018
Automated Process Approved PF02142 (PF02142 MGS-like domain) Jul 2018
Automated Process Approved PF01808 (PF01808 AICARFT/IMPCHase bienzyme) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0006164 purine nucleotide biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006164 purine nucleotide biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002695
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR016193
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002695
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003937 IMP cyclohydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002695
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name purH Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK3998 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW3970 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b4006 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase Experimental - PubMed ID: 2192230
Reference: Escherichia coli K-12 		Mar 2008
Automated Process Approved alternate product name AICAR formyltransferase Experimental - PubMed ID: 2192230
Reference: Escherichia coli K-12 		Sep 2007
Automated Process Approved alternate product name fused IMP cyclohydrolase/phosphoribosylaminoimidazolecarboxamide formyltransferase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated alternate product name bifunctional: IMP cyclohydrolase (N-terminal); phosphoribosylaminoimidazolecarboxamide formyltransferase (C-terminal) Published Annotation - Database Name: GenProtEC Jan 2006
Person Uncurated alternate product name phosphoribosylaminoimidazolecarboxamideformyltra nsferase = AICAR formyltransferase; IMP cyclohydrolase Experimental - PubMed ID: 2192230
Reference: Escherichia coli 		Jan 2006
Automated Process Approved alternate product name bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase Experimental - PubMed ID: 2192230
Reference: Escherichia coli K-12 		Sep 2007
Protein Family
Person Approved EnteroFam EnteroFam0013097: Trusted threshold=1551.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001561
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR002695 Bifunctional purine biosynthesis protein PurH-like Protein Sequence Similarity - InterPro Domain: IPR002695
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR016193 Cytidine deaminase-like Protein Sequence Similarity - InterPro Domain: IPR016193
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR011607 Methylglyoxal synthase-like domain Protein Sequence Similarity - InterPro Domain: IPR011607
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013982 (DEPRECATED) AICARFT/IMPCHase bienzyme, transformylase domain Protein Sequence Similarity - InterPro Domain: IPR013982
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF02142 MGS-like domain Protein Sequence Similarity - PFAM Model Name: PF02142
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF01808 AICARFT/IMPCHase bienzyme Protein Sequence Similarity - PFAM Model Name: PF01808
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036914 Methylglyoxal synthase-like domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036914
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 3.5.4.10 Published Annotation - Swiss-Prot Accession Number: P15639 Feb 2006
Person Approved EC number 2.1.2.3 Published Annotation - Swiss-Prot Accession Number: P15639 Feb 2006
Person Uncurated MultiFun 1.7.33 (metabolism; central intermediary metabolism; nucleotide and nucleoside conversions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.2.1 (metabolism; building block biosynthesis; nucleotide; purine biosynthesis) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P15639 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1790439 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P15639 Published Annotation - Swiss-Prot Accession Number: P15639 Jan 2005
Automated Process Approved db xref ASAP:ABE-0013097 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948503 Published Annotation - Entrez Gene Database ID: 948503
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref EcoGene:EG10795 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Purine ribonucleotide biosynthesis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Uncurated mutant phenotype signature-tagged mutagenized purH; mutant shows sharply reduced lethality in mice Experimental - PubMed ID: 14742535
Reference: Yersinia pestis Kimberly53 		Nov 2005
Person Uncurated mutant phenotype signature-tagged mutagenized purH; mutant introduced into mice shows reduced ability to infect spleen Experimental - PubMed ID: 14742535
Reference: Yersinia pestis Kimberly53 		Nov 2005
Person Uncurated mutant phenotype signature-tagged mutagenized purH; mutant shows sharply reduced ability to compete in mice when coinnoculated with wild-type strain Experimental - PubMed ID: 14742535
Reference: Yersinia pestis Kimberly53 		Nov 2005
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006164 - purine nucleotide biosynthetic process; GO_process: GO:0015949 - nucleobase, nucleoside and nucleotide interconversion Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76980.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006164 purine nucleotide biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002695
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0006164 purine nucleotide biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR016193
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002695
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003937 IMP cyclohydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002695
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001561 purH CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000240 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000505 purH CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000608 purH CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001211 purH CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001102 purH CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000465 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003009 CDS
Person Approved Go view Buchnera aphidicola APS ABZ-0129301 purH CDS
Person Approved Go view Buchnera aphidicola Bp ABW-0104758 purH CDS
Person Approved Go view Buchnera aphidicola Sg [T] ABV-0104138 purH CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000277 purH CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003943 purH CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004235 purH CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0000266 purH CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0009016 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0014933 purH CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000247 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000527 purH CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0296825 purH CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000341 purH CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000194 purH CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001758 purH CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009157 purH CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004267 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006976 purH CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004063 purH CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004862 purH CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010199 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009804 purH CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009076 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081170 purH CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004647 purH CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005202 purH CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006083 purH CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010423 purH CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004599 purH CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008986 purH CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0006547 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008805 purH CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007318 purH CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006965 purH CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010140 purH CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010307 purH CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009935 purH CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008123 purH CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010882 purH CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006111 purH CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010628 purH CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029173 purH CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009598 purH CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008929 purH CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003900 purH CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003706 purH CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003348 purH CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004618 purH CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178734 purH CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004391 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004449 purH CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135037 purH CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001843 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003823 purH CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003942 purH CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001038 purH CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004437 purH CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002640 purH CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008781 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003343 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004471 purH CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003478 purH CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000508 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000245 purH CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0004140 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0007990 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000005 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0290953 purH CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007240 purH CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060454 purH CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000150 purH CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001278 purH CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001380 purH CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004711 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0137899 purH CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004942 purH CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008583 purH CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003641 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004768 pseudogene
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008823 purH CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013105 purH CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010428 purH CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008878 purH CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008862 purH CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008700 purH CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008473 purH CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008638 purH CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007974 purH CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008856 purH CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0009093 purH CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004050 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0004009 purH CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005190 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004207 purH CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008451 purH CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008741 purH CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112814 purH CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085177 purH CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0005023 purH CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102844 purH CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004982 purH CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009235 purH CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0009019 purH CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000661 purH CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0263993 purH CDS
Person Approved Go view Shigella boydii 227 ADV-0004383 purH CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009917 purH CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004548 purH CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004209 purH CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074881 purH CDS
Person Approved Go view Shigella flexneri 301 ABT-0090296 purH CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004333 purH CDS
Person Approved Go view Shigella sonnei 046 ADD-0004543 purH CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000292 VC0276 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000035 purH CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0001039 purH CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002755 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000956 purH CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003919 purH CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003927 purH CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003073 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241705 purH CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004571 purH CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004299 purH CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008523 purH CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003646 purH CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127814 purH CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008577 purH CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008732 purH CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007576 purH CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008153 purH CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030122 purH CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0009034 purH CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000303 purH CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004476 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007871 purH CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000327 purH CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000380 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000417 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0000151 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000615 purH CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21600mutantTn5 InsertionRequest the StrainABE-0013097purHpurH::Tn5KAN-I-SceI at position 1098 in Minus orientation ,- pKD465Blattner Laboratory
FB21601mutantTn5 InsertionRequest the StrainABE-0013097purHpurH::Tn5KAN-I-SceI at position 1098 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4200943 to 4212532
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0013079yjaHCDSforward42005664201261Downstream
ABE-0013081zraPCDScomplement42012634201688Downstream
ABE-0013088zraSCDSforward42019264203323Downstream
ABE-0013093zraRCDSforward42033204204645Downstream
ABE-0013095purDCDScomplement42046424205931Downstream
ABE-0013097purHCDScomplement42059434207532Matches
ABE-0013103rrsErRNAforward42081474209688Upstream
ABE-0013105gltVtRNAforward42097744209849Upstream
ABE-0013107rrlErRNAforward42100434212946Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.