Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0013121 (metA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0013121 showshow history
Names
metA JW3973 ECK4005 b4013
Product
homoserine transsuccinylase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4214280 4215209 930 310
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001562
EnteroFam0013121: Trusted threshold=891; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR005697 (IPR005697 Homoserine O-succinyltransferase MetA) Apr 2008
Automated Process Approved IPR033752 (IPR033752 MetA family) Jul 2018
Automated Process Approved IPR029062 (IPR029062 Class I glutamine amidotransferase-like) Jul 2018
Automated Process Approved PF04204 (PF04204 Homoserine O-succinyltransferase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009086 methionine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005697
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005697
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0008899 homoserine O-succinyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005697
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0008415 (DEPRECATED) acyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005697
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name metA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK4005 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW3973 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b4013 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product homoserine transsuccinylase Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved alternate product name homoserine O-transsuccinylase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Person Approved EnteroFam EnteroFam0013121: Trusted threshold=891; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001562
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF04204 Homoserine O-succinyltransferase Protein Sequence Similarity - PFAM Model Name: PF04204
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR029062 Class I glutamine amidotransferase-like Protein Sequence Similarity - InterPro Domain: IPR029062
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR033752 MetA family Protein Sequence Similarity - InterPro Domain: IPR033752
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR005697 Homoserine O-succinyltransferase MetA Protein Sequence Similarity - InterPro Domain: IPR005697
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 2.3.1.46 Published Annotation - Swiss-Prot Accession Number: P07623 Feb 2006
Person Uncurated MultiFun 1.5.1.9 (metabolism; building block biosynthesis; amino acids; methionine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P07623 Published Annotation - Swiss-Prot Accession Number: P07623 Jan 2005
Automated Process Approved db xref EcoGene:EG10581 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948513 Published Annotation - Entrez Gene Database ID: 948513
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref ASAP:ABE-0013121 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1790443 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P07623 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Amino acid biosynthesis: Methionine Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0009086 - methionine biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76983.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved regulation expression regulated by acetate; expression is induced by acetate Experimental - PubMed ID: 11244055
Reference: Escherichia coli ATCC43888 (EHEC) 		Nov 2005
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005697
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009086 methionine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005697
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0008899 homoserine O-succinyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005697
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0008415 (DEPRECATED) acyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005697
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001562 metA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001600 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001089 metA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001094 metA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000301 metA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001347 metA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000138 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003546 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000278 metA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003941 metA CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004230 metA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000263 metA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004805 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017813 metA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003795 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000528 metA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0296833 metA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003568 metA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003225 metA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001916 metA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006244 metA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004274 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006969 metA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004069 metA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004828 metA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010193 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006147 metA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007747 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081178 metA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004659 metA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004404 metA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006090 metA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006545 metA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004607 metA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008993 metA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003037 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008811 metA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007324 metA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006971 metA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008967 metA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010313 metA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006986 metA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008129 metA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007100 metA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005680 metA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006450 metA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006105 metA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0004950 metA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029180 metA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006953 metA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008936 metA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004589 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003709 metA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004099 metA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004854 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004707 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004668 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004624 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178737 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004398 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004459 metA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135043 metA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003245 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004581 metA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000002 metA CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004444 metA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002641 metA CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004869 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003344 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002393 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003486 metA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000504 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000253 metA CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0004130 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0007993 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003758 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288861 metA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007245 metA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064311 metA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002298 metA CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001041 metA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002987 metA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009022 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0146799 metA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008590 metA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003634 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004780 metA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008830 metA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013114 metA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012392 metA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007924 metA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008870 metA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007275 metA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0003937 metA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005655 metA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007980 metA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008863 metA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008167 metA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004056 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0004015 metA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005200 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004214 metA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007736 metA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008457 metA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008470 metA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0114316 metA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085837 metA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0005034 metA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102862 metA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004974 metA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007617 metA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005692 metA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001337 metA CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265242 metA CDS
Person Approved Go view Shigella boydii 227 ADV-0004389 metA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009925 metA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004557 metA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004891 metA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074874 metA CDS
Person Approved Go view Shigella flexneri 301 ABT-0090298 metA pseudogene
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004339 metA CDS
Person Approved Go view Shigella sonnei 046 ADD-0004549 metA CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0003121 metA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001685 VC1611 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007122 metA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002280 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011162 metA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003387 metA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003793 metA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003537 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241694 metA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004742 metA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000022 metA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007507 metA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003647 metA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127806 metA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008531 metA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008262 metA CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009190 metA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008240 metA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029596 metA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006281 metA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000019 metA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000200 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007517 metA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004231 metA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003770 metA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004580 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000424 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0000473 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000613 metA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21602mutantTn5 InsertionRequest the StrainABE-0013121metAmetA::Tn5KAN-I-SceI at position 229 in Plus orientation ,+ pKD460Blattner Laboratory
FB21603mutantTn5 InsertionRequest the StrainABE-0013121metAmetA::Tn5KAN-I-SceI at position 229 in Plus orientation ,- pKD465Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4209280 to 4220209
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0013103rrsErRNAforward42081474209688Upstream
ABE-0013105gltVtRNAforward42097744209849Upstream
ABE-0013107rrlErRNAforward42100434212946Upstream
ABE-0013109rrfErRNAforward42130404213159Upstream
ABE-0013112yjaACDSforward42132344213617Upstream
ABE-0013114yjaBCDScomplement42136804214123Upstream
ABE-0013121metACDSforward42142804215209Matches
ABE-0013125aceBCDSforward42154784217079Downstream
ABE-0013128aceACDSforward42171094218413Downstream
ABE-0285664repeat_regionforward42184364218567Downstream
ABE-0013131aceKCDSforward42185964220332Downstream
ABE-0285846aceK-intncRNAforward42188794218963Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.