Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0013125 (aceB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0013125 showshow history
Names
aceB JW3974 ECK4006 mas b4014
Product
malate synthase A
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4215478 4217079 1602 534
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001563
EnteroFam0013125: Trusted threshold=1488.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001465 (IPR001465 Malate synthase) Apr 2008
Automated Process Approved IPR011076 (IPR011076 Malate synthase superfamily) Apr 2008
Automated Process Approved IPR006252 (IPR006252 Malate synthase A) Apr 2008
Automated Process Approved PF01274 (PF01274 Malate synthase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0006097 glyoxylate cycle Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006099 tricarboxylic acid cycle GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001465
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006097 glyoxylate cycle GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001465
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011076
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004474 malate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001465
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name aceB Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW3974 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK4006 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym mas Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b4014 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product malate synthase A Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0013125: Trusted threshold=1488.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001563
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR006252 Malate synthase A Protein Sequence Similarity - InterPro Domain: IPR006252
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001465 Malate synthase Protein Sequence Similarity - InterPro Domain: IPR001465
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011076 Malate synthase superfamily Protein Sequence Similarity - InterPro Domain: IPR011076
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01274 Malate synthase Protein Sequence Similarity - PFAM Model Name: PF01274
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 2.3.3.9 Published Annotation - Swiss-Prot Accession Number: P08997 Feb 2006
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.2 (metabolism; central intermediary metabolism; glyoxylate bypass) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10023 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0013125 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P08997 Published Annotation - Swiss-Prot Accession Number: P08997 Jan 2005
Automated Process Approved db xref GI:1790444 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948512 Published Annotation - Entrez Gene Database ID: 948512
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P08997 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Central intermediary metabolism: Glyoxylate bypass Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006097 - glyoxylate cycle Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76984.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Approved GO biological process GO:0006097 glyoxylate cycle Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006097 glyoxylate cycle GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001465
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006099 tricarboxylic acid cycle GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001465
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004474 malate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001465
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011076
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001563 aceB CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001601 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001701 aceB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001792 aceB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001691 aceB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001746 aceB CDS
Ortholog
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003547 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000279 aceB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003939 aceB CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004229 aceB CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000262 aceB CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004806 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017815 aceB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003794 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000529 aceB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001917 aceB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006245 aceB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004275 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006968 aceB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004070 aceB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004827 aceB CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010192 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006148 aceB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007746 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081179 aceB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004660 aceB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004403 aceB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006091 aceB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006546 aceB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004608 aceB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008994 aceB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003038 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008812 aceB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007325 aceB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006972 aceB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008966 aceB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010314 aceB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006987 aceB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008130 aceB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007101 aceB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005681 aceB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006451 aceB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006104 aceB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0004951 aceB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029181 aceB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006954 aceB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008937 aceB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004590 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003710 aceB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004100 aceB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004853 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004708 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004667 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004625 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004399 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004460 aceB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135044 aceB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003246 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004582 aceB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003324 aceB CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000004 aceB CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004445 aceB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002642 aceB CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004870 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003345 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002392 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003487 aceB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000503 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000254 aceB CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0004129 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0007994 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003759 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288863 aceB CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007246 aceB CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064310 aceB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002294 aceB CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001040 aceB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002986 aceB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009021 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0146796 aceB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008591 aceB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003633 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004781 aceB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008831 aceB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013116 aceB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012394 aceB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007923 aceB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008871 aceB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007276 aceB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0003938 aceB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005656 aceB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007981 aceB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008864 aceB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008168 aceB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004057 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0004016 aceB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005201 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004215 aceB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007735 aceB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008458 aceB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008471 aceB CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0114317 aceB CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085838 aceB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0005035 aceB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102868 aceB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004973 aceB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007616 aceB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005693 aceB CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001338 aceB CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265049 aceB CDS
Person Approved Go view Shigella boydii 227 ADV-0004390 aceB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009926 aceB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004558 aceB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0285250 aceB pseudogene
Person Approved Go view Shigella flexneri 301 ABT-0286287 aceB pseudogene
Person Approved Go view Shigella sonnei 046 ADD-0004550 aceB CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0003120 aceB CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000798 VC0734 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007085 aceB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002279 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011160 aceB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003386 aceB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003794 aceB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003538 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241693 aceB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004744 aceB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000024 aceB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007509 aceB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003648 aceB CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127803 aceB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008533 aceB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008264 aceB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003598 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009192 aceB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008238 aceB CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029598 aceB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006283 aceB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000021 aceB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000202 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007515 aceB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004233 aceB CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003769 aceB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004579 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000425 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0000478 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000612 aceB CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4210478 to 4222079
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0013107rrlErRNAforward42100434212946Upstream
ABE-0013109rrfErRNAforward42130404213159Upstream
ABE-0013112yjaACDSforward42132344213617Upstream
ABE-0013114yjaBCDScomplement42136804214123Upstream
ABE-0013121metACDSforward42142804215209Upstream
ABE-0013125aceBCDSforward42154784217079Matches
ABE-0013128aceACDSforward42171094218413Downstream
ABE-0285664repeat_regionforward42184364218567Downstream
ABE-0013131aceKCDSforward42185964220332Downstream
ABE-0285846aceK-intncRNAforward42188794218963Downstream
ABE-0013133arpACDScomplement42203014222487Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.