Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0013128 (aceA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0013128 showshow history
Names
aceA JW3975 ECK4007 icl b4015
Product
isocitrate lyase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4217109 4218413 1305 435
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001564
EnteroFam0013128: Trusted threshold=1275.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR000918 (IPR000918 (DEPRECATED) Isocitrate lyase/phosphorylmutase) Apr 2008
Automated Process Approved IPR006254 (IPR006254 Isocitrate lyase) Apr 2008
Automated Process Approved IPR015809 (IPR015809 (DEPRECATED) Isocitrate lyase and phosphorylmutase, core) Apr 2008
Automated Process Approved IPR015813 (IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily) Jul 2018
Automated Process Approved PF00463 (PF00463 Isocitrate lyase family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0006097 glyoxylate cycle Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0019752 carboxylic acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006254
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000918
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0004451 isocitrate lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006254
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000918
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name aceA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK4007 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW3975 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym icl Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b4015 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product isocitrate lyase Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0013128: Trusted threshold=1275.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001564
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR006254 Isocitrate lyase Protein Sequence Similarity - InterPro Domain: IPR006254
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily Protein Sequence Similarity - InterPro Domain: IPR015813
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00463 Isocitrate lyase family Protein Sequence Similarity - PFAM Model Name: PF00463
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR015809 (DEPRECATED) Isocitrate lyase and phosphorylmutase, core Protein Sequence Similarity - InterPro Domain: IPR015809
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000918 (DEPRECATED) Isocitrate lyase/phosphorylmutase Protein Sequence Similarity - InterPro Domain: IPR000918
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 4.1.3.1 Published Annotation - Swiss-Prot Accession Number: P0A9G6 Feb 2006
Person Uncurated MultiFun 1.7.2 (metabolism; central intermediary metabolism; glyoxylate bypass) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0013128 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10022 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A9G6 Published Annotation - Swiss-Prot Accession Number: P0A9G6 Jan 2006
Automated Process Approved db xref GI:1790445 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948517 Published Annotation - Entrez Gene Database ID: 948517
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A9G6 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Central intermediary metabolism: Glyoxylate bypass Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006097 - glyoxylate cycle Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76985.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Approved GO biological process GO:0006097 glyoxylate cycle Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000918
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0019752 carboxylic acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006254
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000918
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004451 isocitrate lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006254
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001564 aceA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001602 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001558 aceA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001550 aceA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001690 aceA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001723 aceA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000135 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003548 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000280 aceA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003938 aceA CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004228 aceA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000261 aceA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004807 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017816 aceA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003793 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000530 aceA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001918 aceA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006246 aceA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004276 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006967 aceA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004071 aceA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004826 aceA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010191 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006149 aceA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007745 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081180 aceA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004661 aceA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004402 aceA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006092 aceA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006547 aceA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004609 aceA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008995 aceA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003039 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008813 aceA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007326 aceA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006973 aceA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008965 aceA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010315 aceA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006988 aceA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008131 aceA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007102 aceA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005682 aceA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006452 aceA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006103 aceA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0004952 aceA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029182 aceA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006955 aceA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008938 aceA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004591 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003711 aceA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004101 aceA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004852 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004709 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004666 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004626 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178740 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004400 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004461 aceA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135045 aceA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003247 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004583 aceA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003323 aceA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000005 aceA CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004446 aceA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002643 aceA CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004871 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003346 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002391 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003488 aceA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000502 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000255 aceA CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0004128 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0007995 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003760 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288864 aceA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007247 aceA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064309 aceA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002295 aceA CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001039 aceA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002985 aceA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009020 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0146793 aceA CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0003416 aceA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008592 aceA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003632 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004782 aceA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008832 aceA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013119 aceA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012397 aceA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007922 aceA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008872 aceA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007277 aceA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0003939 aceA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005657 aceA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007982 aceA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008865 aceA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008169 aceA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004058 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0004017 aceA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005202 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004216 aceA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007734 aceA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008459 aceA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008472 aceA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0114320 aceA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085839 aceA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0005036 aceA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102871 aceA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004972 aceA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007615 aceA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005694 aceA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001339 aceA CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265050 aceA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009927 aceA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004559 aceA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004889 aceA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074872 aceA CDS
Person Approved Go view Shigella flexneri 301 ABT-0256168 aceA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004341 aceA CDS
Person Uncurated Go view Shigella sonnei 046 ADD-0004551 aceA CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0003119 aceA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000800 VC0736 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007084 aceA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002278 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011156 aceA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003385 aceA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003795 aceA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003539 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241692 aceA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004745 aceA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000025 aceA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007510 aceA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003649 aceA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127798 aceA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008534 aceA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008265 aceA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003599 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009193 aceA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008237 aceA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029599 aceA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006284 aceA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000022 aceA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000203 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007514 aceA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004234 aceA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003768 aceA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004578 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000426 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0000482 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000611 aceA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21604mutantTn5 InsertionRequest the StrainABE-0013128aceAaceA::Tn5KAN-I-SceI at position 1117 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4212109 to 4223413
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0013107rrlErRNAforward42100434212946Upstream
ABE-0013109rrfErRNAforward42130404213159Upstream
ABE-0013112yjaACDSforward42132344213617Upstream
ABE-0013114yjaBCDScomplement42136804214123Upstream
ABE-0013121metACDSforward42142804215209Upstream
ABE-0013125aceBCDSforward42154784217079Upstream
ABE-0013128aceACDSforward42171094218413Matches
ABE-0285664repeat_regionforward42184364218567Downstream
ABE-0013131aceKCDSforward42185964220332Downstream
ABE-0285846aceK-intncRNAforward42188794218963Downstream
ABE-0013133arpACDScomplement42203014222487Downstream
ABE-0013136iclRCDScomplement42228044223628Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.