Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0013143 (yjbB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0013143 showshow history
Names
yjbB JW3980 ECK4012 b4020
Product
putative inorganic phosphate export protein
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4227731 4229362 1632 544
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003841 (IPR003841 Sodium-dependent phosphate transport protein) Apr 2008
Automated Process Approved IPR004633 (IPR004633 Na/Pi-cotransporter II-related/YqeW-like protein) Apr 2008
Automated Process Approved PF02690 (PF02690 Na+/Pi-cotransporter) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006817 phosphate ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003841
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0044341 sodium-dependent phosphate transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003841
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003841
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0015321 (DEPRECATED) sodium-dependent phosphate transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003841
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name yjbB Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK4012 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW3980 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b4020 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product putative inorganic phosphate export protein Published Annotation - EcoCyc Accession Number: EG11919
Reference: Escherichia coli K-12 MG1655 		Jan 2021
Person Approved alternate product name predicted transporter Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name putative transport protein (PNaS family)/regulator/enzyme Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name putative alpha helix protein Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Automated Process Approved alternate product name predicted Na+/Pi-cotransporter Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Automated Process Approved protein family IPR003841 Sodium-dependent phosphate transport protein Protein Sequence Similarity - InterPro Domain: IPR003841
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004633 Na/Pi-cotransporter II-related/YqeW-like protein Protein Sequence Similarity - InterPro Domain: IPR004633
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF02690 Na+/Pi-cotransporter Protein Sequence Similarity - PFAM Model Name: PF02690
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated MultiFun 4.2.A.58 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The Phosphate:Na+ Symporter (PNaS) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11919 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0013143 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948521 Published Annotation - Entrez Gene Database ID: 948521
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0AF43 Published Annotation - Swiss-Prot Accession Number: P0AF43 Jan 2006
Automated Process Approved db xref GI:1790451 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AF43 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function phenotype; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note putative alpha helix protein Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76990.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0044341 sodium-dependent phosphate transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003841
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006817 phosphate ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003841
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003841
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0015321 (DEPRECATED) sodium-dependent phosphate transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003841
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000186 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002286 yjbB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002144 yjbB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001722 yjbB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001961 yjbB CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000458 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003555 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000286 yjbB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003934 PNaS CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004224 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000257 CDS
Automated Process Approved Go view Dickeya chrysanthemi Ech1591 AFK-0004812 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017823 yjbB CDS
Automated Process Approved Go view Dickeya parazeae Ech586 AGC-0003787 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000534 PNaS CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0296836 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003567 yjbB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003219 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001924 pNaS CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006251 pNaS CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004282 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006962 pNaS CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004077 yjbB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004820 yjbB CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010186 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006155 pNaS CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007740 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081187 yjbB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004668 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004395 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006097 pNaS CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006553 pNaS CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004615 yjbB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0009001 pNaS CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003045 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008818 pNaS CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007331 pNaS CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006978 pNaS CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008960 pNaS CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010320 pNaS CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006993 pNaS CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008136 pNaS CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007107 pNaS CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005687 pNaS CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006457 pNaS CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006098 pNaS CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0004957 pNaS CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029187 yjbB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006961 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008944 pNaS CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004598 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003716 yjbB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004106 yjbB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004846 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004714 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004661 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004632 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178748 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004405 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004465 pNaS CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135050 yjbB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003253 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004589 yjbB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003312 yjbB CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004450 yjbB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002648 yjbB CDS
Person Uncurated Go view Musicola paradisiaca Ech703 AGA-0004883 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003360 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002377 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003503 yjbB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000486 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000271 yjbB CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0004113 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008044 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003772 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288883 yjbB CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007260 yjbB CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064302 CDS
Automated Process Approved Go view Pectobacterium brasiliensis 1692 AED-0002297 CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004607 pseudogene
Automated Process Approved Go view Pectobacterium parmentieri WPP163 AFJ-0003859 CDS
Automated Process Approved Go view Pectobacterium sp. PC1 AFL-0009010 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000119 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008603 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003627 CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008840 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013138 yjbB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012415 yjbB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007916 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008879 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007284 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0003945 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005663 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007988 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008872 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008176 pNaS CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004063 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0004022 yjbB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005208 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004222 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007727 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008466 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008479 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0114329 yjbB CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0085843 yjbB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0005042 yjbB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102888 yjbB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004965 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007608 pNaS CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005701 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001354 yjbB CDS
Person Approved Go view Shigella boydii 227 ADV-0004398 yjbB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009932 pNaS CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004566 CDS
Person Uncurated Go view Shigella dysenteriae 197 ADU-0004878 yjbB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074866 yjbB CDS
Person Approved Go view Shigella flexneri 301 ABT-0090301 yjbB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004346 yjbB CDS
Person Approved Go view Shigella sonnei 046 ADD-0004556 yjbB CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0003112 yjbB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001683 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0010306 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003392 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002764 CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003786 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0000503 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000607 yjbB CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21817mutantTn5 InsertionRequest the StrainABE-0013143yjbByjbB::Tn5KAN-I-SceI at position 723 in Plus orientation ,+ pKD460Blattner Laboratory
FB22099mutantTn5 InsertionRequest the StrainABE-0013143yjbByjbB::Tn5KAN-I-SceI at position 723 in Plus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4222731 to 4234362
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0013136iclRCDScomplement42228044223628Upstream
ABE-0013140metHCDSforward42238284227511Upstream
ABE-0013143yjbBCDSforward42277314229362Matches
ABE-0285665repeat_regionforward42293764229445Downstream
ABE-0013146pepECDScomplement42294534230142Downstream
ABE-0013150rluFCDSforward42303544231226Downstream
ABE-0013153yjbDCDScomplement42313594231631Downstream
ABE-0013156lysCCDScomplement42318844233233Downstream
ABE-0013163pgiCDSforward42337584235407Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.