Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0013156 (lysC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0013156 showshow history
Names
lysC JW3984 ECK4016 apk b4024
Product
aspartokinase III
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4231884 4233233 1350 450
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001567
EnteroFam0013156: Trusted threshold=1217.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001341 (IPR001341 Aspartate kinase) Apr 2008
Automated Process Approved IPR001048 (IPR001048 Aspartate/glutamate/uridylate kinase) Apr 2008
Automated Process Approved IPR002912 (IPR002912 ACT domain) Apr 2008
Automated Process Approved IPR012150 (IPR012150 (DEPRECATED) Aspartate kinase) Apr 2008
Automated Process Approved IPR005260 (IPR005260 Aspartate kinase, monofunctional class) Apr 2008
Automated Process Approved IPR036393 (IPR036393 Acetylglutamate kinase-like superfamily) Jul 2018
Automated Process Approved PF00696 (PF00696 Amino acid kinase family) Jul 2018
Automated Process Approved PF01842 (PF01842 ACT domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005260
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0009089 lysine biosynthetic process via diaminopimelate Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002912
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009090 homoserine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008652 cellular amino acid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001341
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0016597 amino acid binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002912
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004072 aspartate kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001341
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name lysC Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym apk Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym JW3984 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK4016 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b4024 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product aspartokinase III Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name aspartokinase III, lysine sensitive Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name aspartokinase III, lysine-sensitive Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0013156: Trusted threshold=1217.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001567
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR012150 (DEPRECATED) Aspartate kinase Protein Sequence Similarity - InterPro Domain: IPR012150
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01842 ACT domain Protein Sequence Similarity - PFAM Model Name: PF01842
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR005260 Aspartate kinase, monofunctional class Protein Sequence Similarity - InterPro Domain: IPR005260
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001341 Aspartate kinase Protein Sequence Similarity - InterPro Domain: IPR001341
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001048 Aspartate/glutamate/uridylate kinase Protein Sequence Similarity - InterPro Domain: IPR001048
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR002912 ACT domain Protein Sequence Similarity - InterPro Domain: IPR002912
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036393 Acetylglutamate kinase-like superfamily Protein Sequence Similarity - InterPro Domain: IPR036393
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00696 Amino acid kinase family Protein Sequence Similarity - PFAM Model Name: PF00696
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 2.7.2.4 Published Annotation - Swiss-Prot Accession Number: P08660 Feb 2006
Person Uncurated MultiFun 1.5.1.7 (metabolism; building block biosynthesis; amino acids; lysine, diaminopimelate) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.1.21 (metabolism; building block biosynthesis; amino acids; homoserine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948531 Published Annotation - Entrez Gene Database ID: 948531
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P08660 Published Annotation - Swiss-Prot Accession Number: P08660 Jan 2005
Automated Process Approved db xref GI:1790455 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P08660 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0013156 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10550 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Amino acid biosynthesis: Lysine Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note aspartokinase III, lysine sensitive; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0009089 - lysine biosynthetic process via diaminopimelate; GO_process: GO:0009090 - homoserine biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76994.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.50
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002912
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008652 cellular amino acid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001341
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009090 homoserine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005260
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0009089 lysine biosynthetic process via diaminopimelate Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0016597 amino acid binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002912
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004072 aspartate kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001341
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001567 lysC CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001605 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000944 lysC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001180 lysC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000147 lysC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000562 lysC CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000457 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003556 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000371 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003931 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004200 lysC CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000236 lysC_1 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004813 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017825 lysC CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003786 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000539 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0296839 lysC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003566 lysC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003217 lysC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002037 lysC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006255 lysC CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004293 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006958 lysC CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004088 lysC CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004809 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010182 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006162 lysC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007733 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081198 lysC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004683 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005214 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006104 lysC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006560 lysC CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004633 lysC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0009009 lysC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003056 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008830 lysC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007343 lysC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006990 lysC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008948 lysC CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010332 lysC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007005 lysC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008148 lysC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007119 lysC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005699 lysC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006469 lysC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006086 lysC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0004969 lysC CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029199 lysC CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006972 lysC CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008951 lysC CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004610 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003720 lysC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004110 lysC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004839 lysC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004728 lysC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004657 lysC CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004643 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178760 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004413 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004477 lysC CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135119 lysC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003265 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004601 lysC CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003309 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001067 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004462 lysC CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002656 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004884 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003357 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002380 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003501 lysC CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000488 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000269 lysC CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0004115 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008004 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003770 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288881 lysC CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007257 lysC CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064300 lysC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002280 lysC CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002201 lysC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003858 lysC CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009009 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0146758 lysC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008639 lysC CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003622 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004828 CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008853 lysC CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013172 lysC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012444 lysC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007880 lysC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008917 lysC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007321 lysC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0003955 lysC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005698 lysC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008024 lysC CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008907 lysC CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008212 lysC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004073 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0004032 lysC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005223 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004258 lysC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007713 lysC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008475 lysC CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0114347 lysC CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085853 lysC CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0005080 lysC CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102974 lysC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004930 lysC CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007598 lysC CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005737 lysC CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001358 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267629 lysC CDS
Person Approved Go view Shigella boydii 227 ADV-0004409 lysC CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009947 lysC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004578 lysC CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004764 lysC CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074753 lysC CDS
Person Approved Go view Shigella flexneri 301 ABT-0090392 lysC CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004449 lysC CDS
Person Approved Go view Shigella sonnei 046 ADD-0004567 lysC CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000430 VC0391 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007068 lysC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002272 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011134 apk CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003372 lysC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003062 lysC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003544 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241684 lysC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008043 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000033 lysC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007516 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003654 lysC CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127783 lysC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008540 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008271 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001250 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009200 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008230 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029606 lysC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006291 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000030 lysC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000210 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007508 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004240 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003762 lysC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004571 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000432 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0000516 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000602 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22910mutantTn5 InsertionRequest the StrainABE-0013156lysClysC::Tn5(KAN-I-SceI) at position 1141 in Plus orientation ,+ pKD46 0Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4226884 to 4238233
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0013140metHCDSforward42238284227511Downstream
ABE-0013143yjbBCDSforward42277314229362Downstream
ABE-0285665repeat_regionforward42293764229445Downstream
ABE-0013146pepECDScomplement42294534230142Downstream
ABE-0013150rluFCDSforward42303544231226Downstream
ABE-0013153yjbDCDScomplement42313594231631Downstream
ABE-0013156lysCCDScomplement42318844233233Matches
ABE-0013163pgiCDSforward42337584235407Upstream
ABE-0285666repeat_regionforward42354214235497Upstream
ABE-0013168yjbECDSforward42359064236148Upstream
ABE-0013172yjbFCDSforward42362624236900Upstream
ABE-0013174yjbGCDSforward42368974237634Upstream
ABE-0013176yjbHCDSforward42376344239730Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.