Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0013163 (pgi) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0013163 showshow history
Names
pgi JW3985 ECK4017 atbR b4025
Product
glucosephosphate isomerase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4233758 4235407 1650 550
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001568
EnteroFam0013163: Trusted threshold=1633.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001672 (IPR001672 Phosphoglucose isomerase (PGI)) Apr 2008
Automated Process Approved PF00342 (PF00342 Phosphoglucose isomerase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0006096 glycolytic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006094 gluconeogenesis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001672
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006096 glycolytic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001672
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0006094 gluconeogenesis Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0004347 glucose-6-phosphate isomerase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001672
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name pgi Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW3985 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK4017 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym atbR Published Sequence Analysis - PubMed ID: 9573193
Reference: Salmonella Typhimurium UK1 		Aug 2005
Person Approved locus tag b4025 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product glucosephosphate isomerase Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0013163: Trusted threshold=1633.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001568
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR001672 Phosphoglucose isomerase (PGI) Protein Sequence Similarity - InterPro Domain: IPR001672
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00342 Phosphoglucose isomerase Protein Sequence Similarity - PFAM Model Name: PF00342
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 5.3.1.9 Published Annotation - Swiss-Prot Accession Number: P0A6T1 Feb 2006
Person Approved MultiFun 1.3.1 (metabolism; energy metabolism, carbon; glycolysis) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Approved MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Approved MultiFun 1.7.8 (metabolism; central intermediary metabolism; gluconeogenesis) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0013163 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A6T1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10702 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A6T1 Published Annotation - Swiss-Prot Accession Number: P0A6T1 Jan 2006
Automated Process Approved db xref GeneID:948535 Published Annotation - Entrez Gene Database ID: 948535
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1790457 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Energy metabolism, carbon: Glycolysis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved genetic interaction rpoS::Ap null mutation plus atbR::TN10 null mutation; double null mutant shows a wild-type acid stress sensitivity profile; acid resistance of atbR::TN10 and acid sensitivity of rpoS::Ap are suppressed Experimental - PubMed ID: 9573193
Reference: Salmonella Typhimurium UK1 		Aug 2005
Person Approved mutant phenotype atbR::TN10; null mutant shows increased resistance to acid stress particularly in cells subjected to rapid pH change Experimental - PubMed ID: 9573193
Reference: Salmonella Typhimurium UK1 		Aug 2005
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006096 - glycolysis; GO_process: GO:0006094 - gluconeogenesis Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76995.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.26
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006094 gluconeogenesis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001672
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0006096 glycolytic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Approved GO biological process GO:0006094 gluconeogenesis Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006096 glycolytic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001672
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004347 glucose-6-phosphate isomerase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001672
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001568 pgi CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001606 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000171 pgi CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000236 pgi CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000323 pgi CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001049 pgi CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000456 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003558 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129843 pgi CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0105244 pgi CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104690 pgi CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000374 pgi CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003930 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004199 pgi CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0000235 pgi CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004814 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017827 pgi CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003785 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000540 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0296845 pgi CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003565 pgi CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003216 pgi CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002035 pgi CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006257 pgi CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004294 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006956 pgi CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004089 pgi CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004808 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010181 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006164 pgi CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007731 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081199 pgi CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004684 pgi CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005215 pgi CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006106 pgi CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006562 pgi CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004635 pgi CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0009010 pgi CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003057 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008832 pgi CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007345 pgi CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006992 pgi CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008946 pgi CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010334 pgi CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007007 pgi CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008150 pgi CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007121 pgi CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005701 pgi CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006471 pgi CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006084 pgi CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0004971 pgi CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029200 pgi CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006974 pgi CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008953 pgi CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004611 pgi CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003721 pgi CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004111 pgi CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004837 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004731 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004655 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004644 pgi CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178761 pgi CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004414 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004478 pgi CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135120 pgi CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003266 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004602 pgi CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003308 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001069 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004463 pgi CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002657 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004885 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003355 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002382 pgi CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003500 pgi CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000490 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000267 pgi CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0004116 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008003 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003768 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288879 pgi CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007256 pgi CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064298 pgi CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002293 pgi CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001035 pgi CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003857 pgi CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009008 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0146755 pgi CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000981 pgi CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008640 pgi CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003621 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004829 pgi CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008854 pgi CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013176 pgi CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012448 pgi CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007879 pgi CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008918 pgi CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007322 pgi CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0003956 pgi CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005699 pgi CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008025 pgi CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008908 pgi CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008213 pgi CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004074 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0004033 pgi CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005225 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004259 pgi CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007712 pgi CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008476 pgi CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008490 pgi CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0114350 pgi CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085854 pgi CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0005081 pgi CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102978 pgi CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004929 pgi CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007597 pgi CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005738 pgi CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001360 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267183 pgi CDS
Person Approved Go view Shigella boydii 227 ADV-0004410 pgi CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009949 pgi CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004580 pgi CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004763 pgi CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074754 pgi CDS
Person Approved Go view Shigella flexneri 301 ABT-0090391 pgi CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004448 pgi CDS
Person Approved Go view Shigella sonnei 046 ADD-0004568 pgi CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0003105 pgi CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000407 VC0374 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000127 pgi CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007065 pgi CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002271 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011130 pgi CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003371 pgi CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003061 pgi CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003545 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241683 pgi CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008042 pgi CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000034 pgi CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007517 pgi CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003655 pgi CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127779 pgi CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008541 pgi CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008272 pgi CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001251 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009201 pgi CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008229 pgi CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029607 pgi CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006292 pgi CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000031 pgi CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000211 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007507 pgi CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004241 pgi CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003761 pgi CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004570 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000433 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0000526 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000601 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21612mutantTn5 InsertionRequest the StrainABE-0013163pgipgi::Tn5KAN-I-SceI at position 1081 in Plus orientation ,- pKD465Blattner Laboratory
FB21613mutantTn5 InsertionRequest the StrainABE-0013163pgipgi::Tn5KAN-I-SceI at position 1081 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4228758 to 4240407
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0013143yjbBCDSforward42277314229362Upstream
ABE-0285665repeat_regionforward42293764229445Upstream
ABE-0013146pepECDScomplement42294534230142Upstream
ABE-0013150rluFCDSforward42303544231226Upstream
ABE-0013153yjbDCDScomplement42313594231631Upstream
ABE-0013156lysCCDScomplement42318844233233Upstream
ABE-0013163pgiCDSforward42337584235407Matches
ABE-0285666repeat_regionforward42354214235497Downstream
ABE-0013168yjbECDSforward42359064236148Downstream
ABE-0013172yjbFCDSforward42362624236900Downstream
ABE-0013174yjbGCDSforward42368974237634Downstream
ABE-0013176yjbHCDSforward42376344239730Downstream
ABE-0285199yjbTCDScomplement42397774240055Downstream
ABE-0285667repeat_regionforward42401574240193Downstream
ABE-0013187psiECDSforward42403254240735Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.