Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0013193 (malG) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0013193 showshow history
Names
malG malJ JW3992 ECK4024 b4032
Product
membrane component of an ABC superfamily maltose transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4242626 4243516 891 297
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000515 (IPR000515 ABC transporter type 1, transmembrane domain MetI-like) Apr 2008
Automated Process Approved IPR035906 (IPR035906 MetI-like superfamily) Jul 2018
Automated Process Approved PF00528 (PF00528 Binding-protein-dependent transport system inner membrane component) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000515
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name malG Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK4024 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym malJ Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW3992 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b4032 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product membrane component of an ABC superfamily maltose transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2008
Person Uncurated alternate product name maltose transport protein (ABC superfamily, membrane) Published Annotation - Database Name: GenProtEC Jan 2006
Automated Process Approved alternate product name maltose transporter subunit Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved alternate product name part of maltose permease, inner membrane Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family PF00528 Binding-protein-dependent transport system inner membrane component Protein Sequence Similarity - PFAM Model Name: PF00528
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR035906 MetI-like superfamily Protein Sequence Similarity - InterPro Domain: IPR035906
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000515 ABC transporter type 1, transmembrane domain MetI-like Protein Sequence Similarity - InterPro Domain: IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 4.3.A.1.m (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily, membrane component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.113 (transport; substrate; maltose) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948530 Published Annotation - Entrez Gene Database ID: 948530
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P68183 Published Annotation - Swiss-Prot Accession Number: P68183 Jan 2006
Automated Process Approved db xref GI:1790464 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P68183 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0013193 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10556 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Transport of small molecules: Carbohydrates, organic acids, alcohols Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note part of maltose permease, inner membrane; membrane component of ABC superfamily; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC77002.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000515
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002275 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002179 malG CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002237 malG CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001848 malG CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002290 malG CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000293 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003924 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004190 malG CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0000226 malG CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000551 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002011 malG CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006266 malG CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004301 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006947 malG CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004096 malG CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004800 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010167 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006173 malG CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007722 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081210 malG CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004693 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005224 malG CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006115 malG CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006571 malG CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004642 malG CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0009020 malG CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003067 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008841 malG CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007354 malG CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007001 malG CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008937 malG CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010343 malG CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007016 malG CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008159 malG CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007130 malG CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005710 malG CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006480 malG CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006075 malG CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0004980 malG CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029207 malG CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006982 malG CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008961 malG CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004619 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003728 malG CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004118 malG CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004829 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004739 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004647 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004654 malG CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178767 malG CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004423 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004486 malG CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135127 malG CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003276 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004611 malG CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003246 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001074 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004471 malG CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002660 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0004429 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001082 malG CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001263 malG CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002837 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001972 malG CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002251 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0007495 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001935 CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0008130 malG CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0137824 malG CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008646 malG CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003613 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004836 malG CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008860 malG CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013197 malG CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012469 malG CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007873 malG CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008924 malG CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007328 malG CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0003964 malG CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005705 malG CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008031 malG CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008914 malG CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008219 malG CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004080 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0004039 malG CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005232 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004265 malG CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007706 malG CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008483 malG CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008497 malG CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0114361 malG CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085860 malG CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0005087 malG CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102993 malG CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004923 malG CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007591 malG CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005744 malG CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001363 CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074763 malG CDS
Person Approved Go view Shigella flexneri 301 ABT-0090384 malG CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004442 malG CDS
Person Approved Go view Shigella sonnei 046 ADD-0004575 malG CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0003100 CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0003836 VCA0943 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007701 malG CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002269 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011122 malG CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003369 malG CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003059 malG CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003705 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241671 malG CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008040 malG CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000036 malG CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007519 malG CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003657 malG CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127765 malG CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008543 malG CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008274 malG CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001254 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009203 malG CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008227 malG CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029609 malG CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006294 malG CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000033 malG CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000213 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007505 malG CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004243 malG CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003759 malG CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004567 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000436 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0000547 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000592 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22911mutantTn5 InsertionRequest the StrainABE-0013193malGmalG::Tn5(KAN-I-SceI) at position 587 in Plus orientation ,+ pKD46 0Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4237626 to 4248516
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0013174yjbGCDSforward42368974237634Downstream
ABE-0013176yjbHCDSforward42376344239730Downstream
ABE-0285199yjbTCDScomplement42397774240055Downstream
ABE-0285667repeat_regionforward42401574240193Downstream
ABE-0013187psiECDSforward42403254240735Downstream
ABE-0013189xylECDScomplement42407794242254Downstream
ABE-0285834malHncRNAcomplement42425314242633Overlaps Downstream
ABE-0013193malGCDScomplement42426264243516Matches
ABE-0013195malFCDScomplement42435314245075Upstream
ABE-0285668repeat_regionforward42450924245217Upstream
ABE-0013200malECDScomplement42452294246419Upstream
ABE-0013216malKCDSforward42467844247899Upstream
ABE-0013218lamBCDSforward42479714249311Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.