Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0013195 (malF) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0013195 showshow history
Names
malF malJ JW3993 ECK4025 b4033
Product
membrane component of an ABC superfamily maltose transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4243531 4245075 1545 515
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000515 (IPR000515 ABC transporter type 1, transmembrane domain MetI-like) Apr 2008
Automated Process Approved IPR029345 (IPR029345 Maltose transport system permease protein MalF, P2 domain) Jul 2018
Automated Process Approved IPR030156 (IPR030156 Maltose/maltodextrin transport system permease protein MalF-like) Jul 2018
Automated Process Approved IPR035906 (IPR035906 MetI-like superfamily) Jul 2018
Automated Process Approved PF14785 (PF14785 Maltose transport system permease protein MalF P2 domain) Jul 2018
Automated Process Approved PF00528 (PF00528 Binding-protein-dependent transport system inner membrane component) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000515
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0043190 ATP-binding cassette (ABC) transporter complex GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR030156
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name malF Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW3993 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym malJ Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK4025 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b4033 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product membrane component of an ABC superfamily maltose transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2008
Person Uncurated alternate product name maltose transport protein (ABC superfamily, membrane) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name part of maltose permease, periplasmic Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Automated Process Approved alternate product name maltose transporter subunit Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Automated Process Approved protein family IPR030156 Maltose/maltodextrin transport system permease protein MalF-like Protein Sequence Similarity - InterPro Domain: IPR030156
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00528 Binding-protein-dependent transport system inner membrane component Protein Sequence Similarity - PFAM Model Name: PF00528
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR029345 Maltose transport system permease protein MalF, P2 domain Protein Sequence Similarity - InterPro Domain: IPR029345
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF14785 Maltose transport system permease protein MalF P2 domain Protein Sequence Similarity - PFAM Model Name: PF14785
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000515 ABC transporter type 1, transmembrane domain MetI-like Protein Sequence Similarity - InterPro Domain: IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR035906 MetI-like superfamily Protein Sequence Similarity - InterPro Domain: IPR035906
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.113 (transport; substrate; maltose) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.A.1.m (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily, membrane component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P02916 Published Annotation - Swiss-Prot Accession Number: P02916 Jan 2005
Automated Process Approved db xref GeneID:948532 Published Annotation - Entrez Gene Database ID: 948532
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P02916 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1790465 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10555 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0013195 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Transport of small molecules: Carbohydrates, organic acids, alcohols Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note part of maltose permease, periplasmic; membrane component of ABC superfamily; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC77003.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000515
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0043190 ATP-binding cassette (ABC) transporter complex GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR030156
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002276 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002118 malF CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002236 malF CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001626 malF CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002324 malF CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000294 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003923 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004189 malF CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000225 malF CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000552 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002010 malF CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006267 malF CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004302 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006946 malF CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004097 malF CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004799 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010166 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006174 malF CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007721 malF CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081211 malF CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004694 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005225 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006116 malF CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006572 malF CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004643 malF CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0009021 malF CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003068 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008842 malF CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007355 malF CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007002 malF CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008936 malF CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010344 malF CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007017 malF CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008160 malF CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007131 malF CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005711 malF CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006481 malF CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006074 malF CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0004981 malF CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029208 malF CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006983 malF CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008962 malF CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004620 malF CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003729 malF CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004119 malF CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004828 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004740 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004646 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004655 malF CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004424 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004487 malF CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135128 malF CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003277 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004612 malF CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003245 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001075 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004472 malF CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002661 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0004430 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001081 malF CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001264 malF CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002836 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001973 malF CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002250 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0007494 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001934 CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0008131 malF CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0137821 malF CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008647 malF CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003612 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004837 malF CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008861 malF CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013202 malF CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012473 malF CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007872 malF CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008925 malF CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007329 malF CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0003965 malF CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005706 malF CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008032 malF CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008915 malF CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008220 malF CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004081 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0004040 malF CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005233 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004266 malF CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007705 malF CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008484 malF CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008498 malF CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0114364 malF CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085861 malF CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0005088 malF CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102996 malF CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004922 malF CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007590 malF CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005745 malF CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001364 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004591 malF CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074764 malF CDS
Person Approved Go view Shigella flexneri 301 ABT-0090383 malF CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004441 malF CDS
Person Approved Go view Shigella sonnei 046 ADD-0004576 malF CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0003099 CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0003837 VCA0944 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007703 malF CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002268 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011117 malF CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003368 malF CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003058 malF CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003706 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241661 malF CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008039 malF CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000037 malF CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007520 malF CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003658 malF CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127754 malF CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008544 malF CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008275 malF CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001255 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009204 malF CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008226 malF CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029610 malF CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006295 malF CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000034 malF CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000214 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007504 malF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004244 malF CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003758 malF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004566 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000437 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0000554 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000591 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21614mutantTn5 InsertionRequest the StrainABE-0013195malFmalF::Tn5KAN-I-SceI at position 902 in Plus orientation ,- pKD465Blattner Laboratory
FB21615mutantTn5 InsertionRequest the StrainABE-0013195malFmalF::Tn5KAN-I-SceI at position 902 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4238531 to 4250075
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0013176yjbHCDSforward42376344239730Downstream
ABE-0285199yjbTCDScomplement42397774240055Downstream
ABE-0285667repeat_regionforward42401574240193Downstream
ABE-0013187psiECDSforward42403254240735Downstream
ABE-0013189xylECDScomplement42407794242254Downstream
ABE-0285834malHncRNAcomplement42425314242633Downstream
ABE-0013193malGCDScomplement42426264243516Downstream
ABE-0013195malFCDScomplement42435314245075Matches
ABE-0285668repeat_regionforward42450924245217Upstream
ABE-0013200malECDScomplement42452294246419Upstream
ABE-0013216malKCDSforward42467844247899Upstream
ABE-0013218lamBCDSforward42479714249311Upstream
ABE-0285669repeat_regionforward42493214249445Upstream
ABE-0013221malMCDSforward42495544250474Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.