Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0013200 (malE) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0013200 showshow history
Names
malE malJ JW3994 ECK4026 b4034
Product
periplasmic-binding component of an ABC superfamily maltose transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4245229 4246419 1191 397
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006061 (IPR006061 Solute-binding family 1, conserved site) Apr 2008
Automated Process Approved IPR006059 (IPR006059 Bacterial extracellular solute-binding protein) Apr 2008
Automated Process Approved IPR006060 (IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein) Apr 2008
Automated Process Approved PF13416 (PF13416 Bacterial extracellular solute-binding protein) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006061
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0015768 maltose transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006060
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006457 protein folding Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0005363 maltose transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006060
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006061
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name malE Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK4026 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW3994 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym malJ Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b4034 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product periplasmic-binding component of an ABC superfamily maltose transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2008
Person Approved alternate product name periplasmic maltose-binding protein; substrate recognition for transport and chemotaxis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name maltose transport protein, chemotaxis (ABC superfamily, peri_bind) Published Annotation - Database Name: GenProtEC Jan 2006
Automated Process Approved alternate product name maltose transporter subunit Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Automated Process Approved protein family IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein Protein Sequence Similarity - InterPro Domain: IPR006060
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006059 Bacterial extracellular solute-binding protein Protein Sequence Similarity - InterPro Domain: IPR006059
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006061 Solute-binding family 1, conserved site Protein Sequence Similarity - InterPro Domain: IPR006061
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF13416 Bacterial extracellular solute-binding protein Protein Sequence Similarity - PFAM Model Name: PF13416
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated MultiFun 4.3.A.1.p (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily, periplasmic binding component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.2 (location of gene products; periplasmic space) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 2.3.4 (information transfer; protein related; chaperoning, folding) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.113 (transport; substrate; maltose) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948538 Published Annotation - Entrez Gene Database ID: 948538
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0AEX9 Published Annotation - Swiss-Prot Accession Number: P0AEX9 Jan 2006
Automated Process Approved db xref ASAP:ABE-0013200 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1790466 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AEX9 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10554 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Transport of small molecules: Carbohydrates, organic acids, alcohols Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note periplasmic maltose-binding protein; substrate recognition for transport and chemotaxis; periplasmic-binding component of ABC superfamily; GO_component: GO:0042597 - periplasmic space; GO_process: GO:0016052 - carbohydrate catabolic process; GO_process: GO:0006457 - protein folding Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC77004.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated regulation regulated by creC (ASAP:ABE-0014430); repression of malE expression under nutrient limiting conditions was not observed in a creC null mutant, as determined by RT-PCR Experimental - PubMed ID: 11350954
Reference: Escherichia coli K-12 		Sep 2007
Person Uncurated regulation regulated by nutritional source; expression of malE is up-regulated in complex medium compared to glucose minimal medium, as determined by RT-PCR Experimental - PubMed ID: 11350954
Reference: Escherichia coli K-12 		Sep 2007
Automated Process Uncurated subcellular localization Periplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0006457 protein folding Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0015768 maltose transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006060
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006061
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0005363 maltose transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006060
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006061
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002277 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002144 malE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002235 malE CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001625 malE CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002239 malE CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000295 malE CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003922 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004188 malE CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000224 malE CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000553 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002009 malE CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006268 malE CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004303 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006945 malE CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004098 malE CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004798 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010164 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006175 malE CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007720 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081212 malE CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004695 malE CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005226 malE CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006117 malE CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006573 malE CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004644 malE CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0009023 malE CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003069 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008843 malE CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007356 malE CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007003 malE CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008935 malE CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010345 malE CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007018 malE CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008161 malE CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007132 malE CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005712 malE CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006482 malE CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006073 malE CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0004982 malE CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029209 malE CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006984 malE CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008963 malE CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004621 malE CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003730 malE CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004120 malE CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004827 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004741 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004645 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004656 malE CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178770 malE CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004425 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004488 malE CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135129 malE CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003278 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004613 malE CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003244 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001076 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004473 malE CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002662 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0004431 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001080 malE CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001265 malE CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002835 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001974 malE CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002249 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0007493 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001933 CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0008132 malE CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0137818 malE CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008648 malE CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003610 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004839 malE CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008862 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013207 malE CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012477 malE CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007871 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008926 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007330 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0003966 malE CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005707 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008034 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008917 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008222 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004082 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0004041 malE CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005234 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004267 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007704 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008485 malE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008499 malE CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0114367 malE CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0085862 malE CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0005091 malE CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0102999 malE CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007589 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005746 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001365 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004592 malE CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074766 malE CDS
Person Approved Go view Shigella flexneri 301 ABT-0090382 malE CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004440 malE CDS
Person Approved Go view Shigella sonnei 046 ADD-0004577 malE CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0003098 malE CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0003838 VCA0945 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007706 malE CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002267 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011113 malE CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003367 malE_2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003057 malE CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003708 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241660 malE1 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008038 malE2 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000038 malE CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007521 malE2 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003659 malE CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127751 malE CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008545 malE2 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008276 malE2 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001256 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009205 malE2 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008225 malE2 CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029611 malE CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006296 malE2 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000035 malE CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000215 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007503 malE2 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004245 malE2 CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003757 malE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004564 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000438 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0000560 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000590 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4240229 to 4251419
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0013187psiECDSforward42403254240735Downstream
ABE-0013189xylECDScomplement42407794242254Downstream
ABE-0285834malHncRNAcomplement42425314242633Downstream
ABE-0013193malGCDScomplement42426264243516Downstream
ABE-0013195malFCDScomplement42435314245075Downstream
ABE-0285668repeat_regionforward42450924245217Downstream
ABE-0013200malECDScomplement42452294246419Matches
ABE-0013216malKCDSforward42467844247899Upstream
ABE-0013218lamBCDSforward42479714249311Upstream
ABE-0285669repeat_regionforward42493214249445Upstream
ABE-0013221malMCDSforward42495544250474Upstream
ABE-0013224yjbIpseudogeneforward42507034252283Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.