Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0013216 (malK) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0013216 showshow history
Names
malK JW3995 ECK4027 malB b4035
Product
ATP-binding component of an ABC superfamily maltose transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4246784 4247899 1116 372
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003439 (IPR003439 ABC transporter-like) Apr 2008
Automated Process Approved IPR013611 (IPR013611 Transport-associated OB, type 2) Apr 2008
Automated Process Approved IPR003593 (IPR003593 AAA+ ATPase domain) Apr 2008
Automated Process Approved IPR008995 (IPR008995 Molybdate/tungstate binding, C-terminal) Apr 2008
Automated Process Approved IPR027417 (IPR027417 P-loop containing nucleoside triphosphate hydrolase) Jul 2018
Automated Process Approved PF00005 (PF00005 ABC transporter) Jul 2018
Automated Process Approved PF08402 (PF08402 TOBE domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR013611
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO cellular component GO:0043190 ATP-binding cassette (ABC) transporter complex GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR013611
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR013611
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name malK Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK4027 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym malB Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym JW3995 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b4035 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product ATP-binding component of an ABC superfamily maltose transporter Experimental - PubMed ID: 11709552
Reference: Escherichia coli K-12 		Mar 2008
Person Approved alternate product name ATP-binding component of transport system for maltose Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name bifunctional: maltose transport protein (ABC superfamily, atp_bind) (N-terminal); phenotypic repressor of mal operon (C-terminal) Published Annotation - Database Name: GenProtEC Jan 2006
Automated Process Approved alternate product name fused maltose transport subunit, ATP-binding component of ABC superfamily/regulatory protein Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Automated Process Approved protein family IPR027417 P-loop containing nucleoside triphosphate hydrolase Protein Sequence Similarity - InterPro Domain: IPR027417
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00005 ABC transporter Protein Sequence Similarity - PFAM Model Name: PF00005
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF08402 TOBE domain Protein Sequence Similarity - PFAM Model Name: PF08402
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR008995 Molybdate/tungstate binding, C-terminal Protein Sequence Similarity - InterPro Domain: IPR008995
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR003593 AAA+ ATPase domain Protein Sequence Similarity - InterPro Domain: IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR003439 ABC transporter-like Protein Sequence Similarity - InterPro Domain: IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013611 Transport-associated OB, type 2 Protein Sequence Similarity - InterPro Domain: IPR013611
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 3.6.1.3 Published Annotation - Database Name: EC2GO: GO:0016887
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated EC number 7.5.2.1 Published Annotation - Swiss-Prot Accession Number: P68187
Reference: Escherichia coli K-12 		Dec 2019
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.113 (transport; substrate; maltose) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.A.1.a (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily ATP binding cytoplasmic component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P68187 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1790467 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P68187 Published Annotation - Swiss-Prot Accession Number: P68187 Jan 2006
Automated Process Approved db xref GeneID:948537 Published Annotation - Entrez Gene Database ID: 948537
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref ASAP:ABE-0013216 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10558 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Transport of small molecules: Carbohydrates, organic acids, alcohols Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note ATP-binding component of transport system for maltose; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC77005.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR013611
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0043190 ATP-binding cassette (ABC) transporter complex GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR013611
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR013611
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002278 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000102 malK CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000121 malK CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001849 malK CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000234 malK CDS
Ortholog
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003921 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004187 malK CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000223 malK CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005898 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0018190 ganK CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002985 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000555 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002008 malK CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006269 malK CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004304 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006944 malK CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004099 malK CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004797 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0010163 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006176 malK CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007719 malK pseudogene
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081213 malK CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004696 malK CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005227 malK CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006118 malK CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006574 malK CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004645 malK CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0009024 malK CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003071 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008844 malK CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007357 malK CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007004 malK CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008934 malK CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010346 malK CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007019 malK CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008162 malK CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007133 malK CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005713 malK CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006483 malK CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006072 malK CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0004983 malK CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029210 malK CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006985 malK_2 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008964 malK CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004623 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003731 malK CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004121 malK CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004825 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004743 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004643 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0004657 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178771 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004426 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004489 malK CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135130 malK CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003280 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004614 malK CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003243 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001077 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004474 malK CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002663 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004428 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0004432 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001079 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001266 malK CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002834 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001975 malK CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002248 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0007492 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001932 CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0008133 malK CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063462 ganK CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002916 CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003042 malK CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000440 ganK CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008032 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0137815 malK CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000908 malK CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008649 malK CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003608 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004840 malK CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008863 malK CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0013212 malK CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012482 malK CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007870 malK CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008927 malK CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007331 malK CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0003967 malK CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005708 malK CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008035 malK CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008918 malK CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008224 malK CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004083 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0004042 malK CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005236 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004268 malK CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007703 malK CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008486 malK CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008500 malK CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0114370 malK CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085863 malK CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0005092 malK CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0103016 malK CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004919 malK CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007588 malK CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005747 malK CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001367 CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074767 malK CDS
Person Approved Go view Shigella flexneri 301 ABT-0090381 malK CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004439 malK CDS
Person Approved Go view Shigella sonnei 046 ADD-0004578 malK CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0003096 malK CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0003839 VCA0946 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007709 malK CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002266 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011106 malK CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003366 malK CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003056 malK CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003709 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241656 malK CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008036 malK2 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000041 malK CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007523 malK2 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003661 malK CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127746 malK CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008547 malK2 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008278 malK2 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003190 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009207 malK2 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008223 malK2 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029614 malK CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006298 malK2 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000038 malK CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000218 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007501 malK2 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004247 malK2 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003755 malK CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004562 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000441 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0000565 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000589 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21616mutantTn5 InsertionRequest the StrainABE-0013216malKmalK::Tn5KAN-I-SceI at position 1060 in Minus orientation ,+ pKD460Blattner Laboratory
FB21617mutantTn5 InsertionRequest the StrainABE-0013216malKmalK::Tn5KAN-I-SceI at position 1060 in Minus orientation ,- pKD465Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4241784 to 4252899
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0013189xylECDScomplement42407794242254Upstream
ABE-0285834malHncRNAcomplement42425314242633Upstream
ABE-0013193malGCDScomplement42426264243516Upstream
ABE-0013195malFCDScomplement42435314245075Upstream
ABE-0285668repeat_regionforward42450924245217Upstream
ABE-0013200malECDScomplement42452294246419Upstream
ABE-0013216malKCDSforward42467844247899Matches
ABE-0013218lamBCDSforward42479714249311Downstream
ABE-0285669repeat_regionforward42493214249445Downstream
ABE-0013221malMCDSforward42495544250474Downstream
ABE-0013224yjbIpseudogeneforward42507034252283Downstream
ABE-0013227ubiCCDSforward42525064253003Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.